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Vsig8 Gene Detail
Summary
  • Symbol
    Vsig8
  • Name
    V-set and immunoglobulin domain containing 8
  • Synonyms
    EG240916
  • Feature Type
    protein coding gene
  • IDs
    MGI:3642995
    NCBI Gene: 240916
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:172383505-172391284 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 79.95 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    210 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3642995
 protein coding gene Chr1:172383505-172391284 (+)
129S1/SvImJ MGP_129S1SvImJ_G0016792
 protein coding gene Chr1:178429735-178437550 (+)
A/J MGP_AJ_G0016771
 protein coding gene Chr1:171141357-171149224 (+)
AKR/J MGP_AKRJ_G0016737
 protein coding gene Chr1:176298596-176308334 (+)
BALB/cJ MGP_BALBcJ_G0016732
 protein coding gene Chr1:171672697-171680305 (+)
C3H/HeJ MGP_C3HHeJ_G0016556
 protein coding gene Chr1:176873364-176883608 (+)
C57BL/6NJ MGP_C57BL6NJ_G0017194
 protein coding gene Chr1:184354675-184362366 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0014900
 protein coding gene Chr1:162826989-162834726 (+)
CAST/EiJ MGP_CASTEiJ_G0016136
 protein coding gene Chr1:176243992-176251791 (+)
CBA/J MGP_CBAJ_G0016530
 protein coding gene Chr1:190904574-190914484 (+)
DBA/2J MGP_DBA2J_G0016637
 protein coding gene Chr1:170059440-170067529 (+)
FVB/NJ MGP_FVBNJ_G0016634
 protein coding gene Chr1:168318593-168326871 (+)
LP/J MGP_LPJ_G0016708
 protein coding gene Chr1:179512206-179520765 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0016661
 protein coding gene Chr1:198134108-198144037 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0017230
 protein coding gene Chr1:176173628-176182335 (+)
PWK/PhJ MGP_PWKPhJ_G0015922
 protein coding gene Chr1:169442913-169451597 (+)
SPRET/EiJ MGP_SPRETEiJ_G0015704
 protein coding gene Chr1:175132143-175139994 (+)
WSB/EiJ MGP_WSBEiJ_G0016198
 protein coding gene Chr1:176322043-176329749 (+)



Homology
more
  • Human Ortholog
    VSIG8, V-set and immunoglobulin domain containing 8
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    VSIG8, V-set and immunoglobulin domain containing 8
  • Links
    NCBI Gene ID: 391123
    neXtProt AC: NX_P0DPA2
    UniProt: P0DPA2

  • Chr Location
    1q23.2; chr1:159854316-159862657 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotypes from 1 allele in 1 genetic background
    10 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    2
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    711
  • Tissues
    5
  • cDNA Data
    18
  • Literature Summary
    1
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 240916 NCBI Gene Model | MGI Sequence Detail 7780 C57BL/6J ±  kb
    transcript NM_177723 RefSeq | MGI Sequence Detail 1814 C57BL/6  
    polypeptide Q6P3A4 UniProt | EBI | MGI Sequence Detail 417 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 20
      Genomic 2
      cDNA 18

      Microarray probesets 1
    References
    more
    • Summaries
      All 27
      Developmental Gene Expression 1
      Gene Ontology 2
      Phenotypes 10
    • Earliest
      J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    12/10/2024
    MGI 6.24     		The Jackson Laboratory