Gm5552 Pseudogene Detail

Summary

• Symbol
  Gm5552
• Name
  predicted gene 5552

• Feature Type
  pseudogene
• IDs
  MGI:3643001
  NCBI Gene: 102640024
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:29999521-30000035 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 15.33 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  140 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643001	pseudogene	Chr5:29999160-30000212 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0013033	pseudogene	Chr5:27755714-27756228 (-)
A/J	MGP_AJ_G0013020	pseudogene	Chr5:26820593-26821107 (-)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0012999	pseudogene	Chr5:27347392-27347906 (-)
C3H/HeJ	MGP_C3HHeJ_G0012851	pseudogene	Chr5:27924268-27925627 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013357	pseudogene	Chr5:29418467-29421448 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011860	pseudogene	Chr6:33231917-33232428 (-)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0012818	pseudogene	Chr5:29960785-29961299 (-)
DBA/2J	MGP_DBA2J_G0012896	pseudogene	Chr5:27017028-27017542 (-)
FVB/NJ	MGP_FVBNJ_G0012901	pseudogene	Chr5:26428897-26429469 (-)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0012916	pseudogene	Chr5:30945570-30946124 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013360	pseudogene	Chr5:27479479-27479993 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0012620	pseudogene	Chr5:27531819-27532333 (-)

Homology

• Gene Tree
  Gm5552
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  2
• Radiation induced
  2
• Spontaneous
  1
• Genomic Mutations
  5 involving Gm5552
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  1

• Ensembl
  ENSMUSG00000106558 (Evidence)
• NCBI Gene
  102640024

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106558	Ensembl Gene Model | MGI Sequence Detail	515	C57BL/6J
transcript	ENSMUST00000197149	Ensembl | MGI Sequence Detail	515	Not Applicable

References

• Summaries
  All 13

  Diseases 1

  Phenotypes 9
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:100332 Wilson L, et al., Random mutagenesis of proximal mouse chromosome 5 uncovers predominantly embryonic lethal mutations. Genome Res. 2005 Aug;15(8):1095-105

TSS for Gm5552:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr50470	Chr5:30000212-30000218 (-)	-180 bp