Gm7079 Pseudogene Detail

Summary

• Symbol
  Gm7079
• Name
  predicted pseudogene 7079

• Feature Type
  pseudogene
• IDs
  MGI:3643105
  NCBI Gene: 632013
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  ChrX:7913468-7913638 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 3.63 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  90 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643105	pseudogene	ChrX:7913409-7913733 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014285	pseudogene	ChrX:2686203-2686373 (+)
A/J	MGP_AJ_G0014300	pseudogene	ChrX:2666981-2667151 (+)
AKR/J	MGP_AKRJ_G0014226	pseudogene	ChrX:2768799-2768969 (+)
BALB/cJ	MGP_BALBcJ_G0014250	pseudogene	ChrX:2663947-2664117 (+)
C3H/HeJ	MGP_C3HHeJ_G0014081	pseudogene	ChrX:2736797-2737065 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014703	pseudogene	ChrX:2771421-2771591 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0014064	pseudogene	ChrX:2924400-2924570 (+)
DBA/2J	MGP_DBA2J_G0014147	pseudogene	ChrX:2655959-2656129 (+)
FVB/NJ	MGP_FVBNJ_G0014144	pseudogene	ChrX:2620193-2620363 (+)
LP/J	MGP_LPJ_G0014238	pseudogene	ChrX:2701260-2701430 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014181	pseudogene	ChrX:2879227-2879397 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014673	pseudogene	ChrX:2670372-2670542 (+)
PWK/PhJ	MGP_PWKPhJ_G0013547	pseudogene	ChrX:2590279-2590569 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013336	pseudogene	ChrX:2647444-2647614 (+)
WSB/EiJ	MGP_WSBEiJ_G0013795	pseudogene	ChrX:2676363-2676533 (+)

Homology

• Gene Tree
  Gm7079
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000068243 (Evidence)
• NCBI Gene
  632013

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000068243	Ensembl Gene Model | MGI Sequence Detail	171	C57BL/6J
transcript	ENSMUST00000119726	Ensembl | MGI Sequence Detail	171	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm7079:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr160484	ChrX:7912830-7912832 (+)	-637 bp
Tssr160485	ChrX:7913427-7913444 (+)	-32 bp