Gm8186 Pseudogene Detail

Summary

• Symbol
  Gm8186
• Name
  predicted gene 8186

• Feature Type
  pseudogene
• IDs
  MGI:3643110
  NCBI Gene: 666609
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:26317965-26318195 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 13.06 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  136 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643110	pseudogene	Chr17:26317846-26318231 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0021797	protein coding gene	Chr15:35028563-35028956 (-)
A/J	no annotation
AKR/J	MGP_AKRJ_G0021737	protein coding gene	Chr15:34664361-34666192 (-)
BALB/cJ	MGP_BALBcJ_G0028906	protein coding gene	Chr4:131570441-131570769 (-)
C3H/HeJ	MGP_C3HHeJ_G0028620	protein coding gene	Chr4:134928163-134928491 (-)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0021055	protein coding gene	Chr15:35018841-35019234 (-)
CBA/J	MGP_CBAJ_G0028585	protein coding gene	Chr4:145340961-145341259 (-)
DBA/2J	MGP_DBA2J_G0028734	protein coding gene	Chr4:131360510-131360879 (-)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0021701	protein coding gene	Chr15:34942105-34942498 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0028727	protein coding gene	Chr4:149833909-149834227 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	MGP_PWKPhJ_G0020799	protein coding gene	Chr15:33566885-33567437 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0020637	protein coding gene	Chr15:34518532-34518925 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm8186
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Radiation induced
  2
• Genomic Mutations
  2 involving Gm8186
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  6 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16
• RefSeq
  1

• Ensembl
  ENSMUSG00000049124 (Evidence)
• NCBI Gene
  666609

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000049124	Ensembl Gene Model | MGI Sequence Detail	231	C57BL/6J
transcript	ENSMUST00000053575	Ensembl | MGI Sequence Detail	231	Not Applicable

References

• Summaries
  All 7

  Phenotypes 3
• Earliest
  J:86784 Bergstrom DE, et al., Overlapping deletions spanning the proximal two-thirds of the mouse t complex. Mamm Genome. 2003 Dec;14(12):817-29
• Latest
  J:194116 Flachs P, et al., Interallelic and intergenic incompatibilities of the Prdm9 (Hst1) gene in mouse hybrid sterility. PLoS Genet. 2012;8(11):e1003044

TSS for Gm8186:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr146918	Chr17:26318231-26318233 (-)	-37 bp