Vma21-ps Pseudogene Detail

Summary

• Symbol
  Vma21-ps
• Name
  VMA21 vacuolar H+-ATPase homolog (S. cerevisiae), pseudogene

• Feature Type
  pseudogene
• IDs
  MGI:3643145
  NCBI Gene: 100040883
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:52496939-52497244 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 28.31 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  117 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643145	pseudogene	Chr4:52494952-52497319 (-)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0028251	protein coding gene	Chr4:49125348-49125653 (-)
AKR/J	MGP_AKRJ_G0028200	protein coding gene	Chr4:50468857-50469162 (-)
BALB/cJ	MGP_BALBcJ_G0028270	protein coding gene	Chr4:49301868-49302173 (-)
C3H/HeJ	MGP_C3HHeJ_G0027991	protein coding gene	Chr4:51020754-51021178 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0036462	protein coding gene	ChrX:101139098-101139403 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0035080	protein coding gene	ChrX:115249324-115249619 (+)
CBA/J	MGP_CBAJ_G0035766	protein coding gene	ChrX:142589523-142589818 (+)
DBA/2J	MGP_DBA2J_G0035923	protein coding gene	ChrX:133115095-133115390 (+)
FVB/NJ	MGP_FVBNJ_G0035709	protein coding gene	ChrX:96803697-96804128 (-)
LP/J	MGP_LPJ_G0035861	protein coding gene	ChrX:99171085-99171517 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0035894	protein coding gene	ChrX:149889763-149890058 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0028747	protein coding gene	Chr4:50705949-50706254 (-)
PWK/PhJ	MGP_PWKPhJ_G0034773	protein coding gene	ChrX:112267297-112267592 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0034600	protein coding gene	ChrX:115852115-115852409 (+)
WSB/EiJ	MGP_WSBEiJ_G0035215	protein coding gene	ChrX:132123943-132124238 (+)

Homology

• Gene Tree
  Vma21-ps
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  6 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas
• Other Vertebrate Links
  Xenbase vma21

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000061619 (Evidence)
• NCBI Gene
  100040883

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000061619	Ensembl Gene Model | MGI Sequence Detail	306	C57BL/6J
transcript	ENSMUST00000114578	Ensembl | MGI Sequence Detail	306	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;