Gm5785 Gene Detail

Summary

• Symbol
  Gm5785
• Name
  predicted gene 5785

• Feature Type
  protein coding gene
• IDs
  MGI:3643232
  NCBI Gene: 544864
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:51874968-51882458 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 22.11 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  274 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643232	protein coding gene	Chr12:51874968-51882458 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  17
• Chemically induced (other)
  1
• Gene trapped
  16
• Genomic Mutations
  1 involving Gm5785
• Find Mice (IMSR)
  11 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• cDNA Data
  6

• Other Mouse Links
  Allen Institute
  GEO

Sequences &
Gene Models

• All Sequences
  7
• RefSeq
  2
• UniProt
  1

• NCBI Gene
  544864

Representative Sequences			Length	Strain/Species
genomic	544864	NCBI Gene Model | MGI Sequence Detail	7491	C57BL/6J
transcript	AK033420	GenBank | ENA | DDBJ | MGI Sequence Detail	2792	C57BL/6J
polypeptide	Q8CCC9	UniProt | EBI | MGI Sequence Detail	158	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 6

  cDNA 6

  
  

  Microarray probesets 1

References

• Summaries
  All 16

  Phenotypes 6
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm5785:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr113424	Chr12:51876127-51876176 (+)	1,184 bp