Gm16420 Pseudogene Detail

Summary

• Symbol
  Gm16420
• Name
  predicted gene 16420

• Feature Type
  pseudogene
• IDs
  MGI:3643246
  NCBI Gene: 674318
• Alliance
  gene page

Location &
Maps

• Sequence Map
  ChrX:119024678-119025523 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 49.58 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  135 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643246	pseudogene	ChrX:119024671-119025526 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014780	pseudogene	ChrX:116985365-116986220 (+)
A/J	MGP_AJ_G0014783	pseudogene	ChrX:116590786-116591615 (+)
AKR/J	MGP_AKRJ_G0014718	pseudogene	ChrX:120397197-120398046 (+)
BALB/cJ	MGP_BALBcJ_G0014735	pseudogene	ChrX:115053222-115054051 (+)
C3H/HeJ	MGP_C3HHeJ_G0014566	pseudogene	ChrX:117239365-117240194 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015218	pseudogene	ChrX:120496763-120497618 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012880	pseudogene	ChrX:112786750-112787564 (+)
CAST/EiJ	MGP_CASTEiJ_G0014185	pseudogene	ChrX:101012638-101013490 (+)
CBA/J	MGP_CBAJ_G0014559	pseudogene	ChrX:124257881-124258710 (+)
DBA/2J	MGP_DBA2J_G0014644	pseudogene	ChrX:115940618-115941470 (+)
FVB/NJ	MGP_FVBNJ_G0014623	pseudogene	ChrX:115262170-115263025 (+)
LP/J	MGP_LPJ_G0014736	pseudogene	ChrX:117853355-117854210 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014671	pseudogene	ChrX:130382615-130383470 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015190	pseudogene	ChrX:116489913-116490768 (+)
PWK/PhJ	MGP_PWKPhJ_G0013988	pseudogene	ChrX:98302521-98303350 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013781	pseudogene	ChrX:101721880-101722720 (+)
WSB/EiJ	MGP_WSBEiJ_G0014266	pseudogene	ChrX:115131842-115132697 (+)

Homology

• Gene Tree
  Gm16420
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000084172 (Evidence)
• NCBI Gene
  674318

Representative Sequences			Length	Strain/Species
genomic	674318	NCBI Gene Model | MGI Sequence Detail	846	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;