Gm9386 Pseudogene Detail

Summary

• Symbol
  Gm9386
• Name
  predicted pseudogene 9386

• Feature Type
  pseudogene
• IDs
  MGI:3643270
  NCBI Gene: 108168317
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr17:81245775-81246143 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 50.97 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  104 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643270	pseudogene	Chr17:81245346-81246222 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0011401	pseudogene	Chr17:83903486-83903866 (-)
A/J	MGP_AJ_G0011390	pseudogene	Chr17:81320206-81320536 (-)
AKR/J	MGP_AKRJ_G0011357	pseudogene	Chr17:82605092-82605472 (-)
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0011258	pseudogene	Chr17:83455547-83456539 (-)
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0010200	pseudogene	Chr17:51658652-51659035 (+)
CAST/EiJ	MGP_CASTEiJ_G0011052	pseudogene	Chr17:56939499-56939874 (+)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0011293	pseudogene	Chr17:79296371-79296751 (-)
LP/J	MGP_LPJ_G0011362	pseudogene	Chr17:84738864-84739244 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0011648	pseudogene	Chr17:83084455-83084804 (-)
PWK/PhJ	MGP_PWKPhJ_G0010919	pseudogene	Chr17:53327211-53327586 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012251	pseudogene	Chr5:53320808-53321194 (+)
WSB/EiJ	MGP_WSBEiJ_G0011090	pseudogene	Chr17:56913710-56914085 (+)

Homology

• Gene Tree
  Gm9386
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  1

• Ensembl
  ENSMUSG00000071040 (Evidence)
• NCBI Gene
  108168317

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000071040	Ensembl Gene Model | MGI Sequence Detail	369	C57BL/6J
transcript	ENSMUST00000095195	Ensembl | MGI Sequence Detail	369	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;