Gm5479 Pseudogene Detail

Summary

• Symbol
  Gm5479
• Name
  predicted gene 5479

• Feature Type
  pseudogene
• IDs
  MGI:3643380
  NCBI Gene: 432993
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr17:3106858-3107269 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 1.95 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  84 from dbSNP Build 142
• Strain Annotations
  6

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643380	pseudogene	Chr17:3106858-3107396 (+)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0011299	pseudogene	Chr17:99944-100378 (+)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0011273	pseudogene	Chr17:7640-8074 (+)
C3H/HeJ	MGP_C3HHeJ_G0011077	pseudogene	Chr16:10998-11432 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011561	pseudogene	Chr17:66442-66876 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0011284	pseudogene	Chr17:119913-120322 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm5479
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  10
• RefSeq
  1

• Ensembl
  ENSMUSG00000044697 (Evidence)
• NCBI Gene
  432993

Representative Sequences			Length	Strain/Species
genomic	432993	NCBI Gene Model | MGI Sequence Detail	412	C57BL/6J

Other
Accession IDs

MGI:3642326

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;