Rps3a3 Pseudogene Detail

Summary

• Symbol
  Rps3a3
• Name
  ribosomal protein S3A3
• Synonyms
  Gm9000

• Feature Type
  pseudogene
• IDs
  MGI:3643406
  NCBI Gene: 668144
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:108807137-108807931 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 59.69 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  138 from dbSNP Build 142
• Strain Annotations
  9

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643406	pseudogene	Chr13:108807114-108807977 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014107	pseudogene	Chr8:119588486-119591904 (+)
A/J	MGP_AJ_G0014130	pseudogene	Chr8:114732542-114734985 (+)
AKR/J	MGP_AKRJ_G0014054	pseudogene	Chr8:118064969-118065883 (+)
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0013914	pseudogene	Chr8:118782239-118783310 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0013975	pseudogene	Chr8:112947356-112948157 (+)
LP/J	MGP_LPJ_G0014056	pseudogene	Chr8:119726519-119729628 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014004	pseudogene	Chr8:130723224-130724251 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010759	pseudogene	Chr10:117110459-117111226 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Rps3a3
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  APF
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas
• Other Vertebrate Links
  GEISHA RPS3A

Sequences &
Gene Models

• All Sequences
  13
• RefSeq
  1

• Ensembl
  ENSMUSG00000059751 (Evidence)
• NCBI Gene
  668144

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000059751	Ensembl Gene Model | MGI Sequence Detail	795	C57BL/6J
transcript	ENSMUST00000074680	Ensembl | MGI Sequence Detail	795	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Rps3a3:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr120984	Chr13:108807110-108807115 (+)	-24 bp