Gm6365 Pseudogene Detail

Summary

• Symbol
  Gm6365
• Name
  predicted pseudogene 6365

• Feature Type
  pseudogene
• IDs
  MGI:3643502
  NCBI Gene: 622845
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr19:11854979-11855722 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 8.55 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  140 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643502	pseudogene	Chr19:11854009-11856032 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0011416	pseudogene	Chr18:9327439-9328096 (+)
A/J	MGP_AJ_G0011409	pseudogene	Chr18:9178768-9179726 (+)
AKR/J	MGP_AKRJ_G0011373	pseudogene	Chr18:9461499-9462515 (+)
BALB/cJ	MGP_BALBcJ_G0011386	pseudogene	Chr18:9123370-9124431 (+)
C3H/HeJ	MGP_C3HHeJ_G0011275	pseudogene	Chr18:9331502-9332456 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011678	pseudogene	Chr18:9817048-9818142 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009818	pseudogene	Chr13:5428684-5429417 (+)
CAST/EiJ	MGP_CASTEiJ_G0011136	pseudogene	Chr19:8594718-8595446 (-)
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0011303	pseudogene	Chr18:9024612-9025661 (+)
FVB/NJ	MGP_FVBNJ_G0011310	pseudogene	Chr18:8885400-8886637 (+)
LP/J	MGP_LPJ_G0011434	pseudogene	Chr19:9283751-9284431 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011301	pseudogene	Chr18:10118541-10120161 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011666	pseudogene	Chr18:9216377-9217097 (+)
PWK/PhJ	MGP_PWKPhJ_G0010950	pseudogene	Chr18:9084650-9085370 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010774	pseudogene	Chr18:9481686-9482406 (+)
WSB/EiJ	MGP_WSBEiJ_G0011119	pseudogene	Chr18:9225786-9226506 (+)

Homology

• Gene Tree
  Gm6365
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000051548 (Evidence)
• NCBI Gene
  622845

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000051548	Ensembl Gene Model | MGI Sequence Detail	744	C57BL/6J
transcript	ENSMUST00000054711	Ensembl | MGI Sequence Detail	744	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;