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Litafd Gene Detail
Summary
  • Symbol
    Litafd
  • Name
    LITAF domain containing
  • Synonyms
    Gm43786, Gm5767
  • Feature Type
    protein coding gene
  • IDs
    MGI:3643507
    NCBI Gene: 436336
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:8498634-8501775 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 16, 4.27 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    184 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3643507
 protein coding gene Chr16:8489542-8501775 (+)
129S1/SvImJ MGP_129S1SvImJ_G0022498
 protein coding gene Chr16:5353058-5356199 (+)
A/J MGP_AJ_G0022460
 protein coding gene Chr16:5037064-5040207 (+)
AKR/J MGP_AKRJ_G0022436
 protein coding gene Chr16:5314943-5318086 (+)
BALB/cJ MGP_BALBcJ_G0022464
 protein coding gene Chr16:5206380-5209521 (+)
C3H/HeJ MGP_C3HHeJ_G0022231
 protein coding gene Chr16:5353159-5356300 (+)
C57BL/6NJ MGP_C57BL6NJ_G0022913
 protein coding gene Chr16:5498797-5501938 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0020434
 protein coding gene Chr16:5234521-5237769 (+)
CAST/EiJ MGP_CASTEiJ_G0021758
 protein coding gene Chr16:5372321-5375506 (+)
CBA/J MGP_CBAJ_G0022200
 protein coding gene Chr16:5708302-5711443 (+)
DBA/2J MGP_DBA2J_G0022331
 protein coding gene Chr16:5082700-5085841 (+)
FVB/NJ MGP_FVBNJ_G0022307
 protein coding gene Chr16:5066146-5069287 (+)
LP/J MGP_LPJ_G0022399
 protein coding gene Chr16:5324680-5327821 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0022329
 protein coding gene Chr16:5497051-5500192 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0022926
 protein coding gene Chr16:5265079-5268220 (+)
PWK/PhJ MGP_PWKPhJ_G0021498
 protein coding gene Chr16:5254845-5258003 (+)
SPRET/EiJ MGP_SPRETEiJ_G0021328
 protein coding gene Chr16:5319017-5322405 (+)
WSB/EiJ MGP_WSBEiJ_G0021806
 protein coding gene Chr16:5298945-5302086 (+)



Homology
more
  • Human Ortholog
    LITAFD, LITAF domain containing
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    LITAFD, LITAF domain containing
  • Links
    NCBI Gene ID: 101929989
    UniProt: A0A1B0GVX0

  • Chr Location
    chr16:8882351-8885351 (+)  GRCh38
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    5
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
Sequences &
Gene Models
less
  • All Sequences
    35
  • RefSeq
    8
  • UniProt
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000107252 Ensembl Gene Model | MGI Sequence Detail 3142 C57BL/6J ±  kb
transcript ENSMUST00000201722 Ensembl | MGI Sequence Detail 524 Not Applicable  
polypeptide ENSMUSP00000143858 Ensembl | MGI Sequence Detail 78 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR037519 LITAF domain containing protein
    IPR006629 LPS-induced tumour necrosis factor alpha factor
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1
Other
Accession IDs
less
MGI:5663923, MGI:7286228
References
more
  • Summaries
    All 9
    Gene Ontology 1
  • Earliest
    J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
  • Latest
    J:161428 Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas, Annotation inferences using phylogenetic trees. 2010;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory