Eddm13 MGI Mouse Gene Detail - MGI:3643580

Symbol

Eddm13
Name

epididymal protein 13
Synonyms

Epp13

Feature Type

protein coding gene
IDs

MGI:3643580
NCBI Gene: 627821
Alliance

gene page
Transcription Start Sites

5 TSS

Sequence Map

Chr7:6255636-6284860 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 7, 3.62 cM
Mapping Data

1 experiment

SNPs within 2kb

1108 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643580	protein coding gene	Chr7:6255636-6285065 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0031598	protein coding gene	Chr7:3318674-3348398 (+)
A/J	MGP_AJ_G0031572	protein coding gene	Chr7:3233607-3264508 (+)
AKR/J	MGP_AKRJ_G0031501	protein coding gene	Chr7:3451919-3482756 (+)
BALB/cJ	MGP_BALBcJ_G0031580	protein coding gene	Chr7:3339689-3370079 (+)
C3H/HeJ	MGP_C3HHeJ_G0031301	protein coding gene	Chr7:3306036-3339884 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0032042	protein coding gene	Chr7:3517871-3552347 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0029157	protein coding gene	Chr7:2927324-2956124 (+)
CAST/EiJ	MGP_CASTEiJ_G0030664	protein coding gene	Chr7:3199958-3229325 (+)
CBA/J	MGP_CBAJ_G0031258	protein coding gene	Chr7:3617378-3656877 (+)
DBA/2J	MGP_DBA2J_G0031417	protein coding gene	Chr7:3257771-3287042 (+)
FVB/NJ	MGP_FVBNJ_G0031370	protein coding gene	Chr7:3255744-3284652 (+)
LP/J	MGP_LPJ_G0031502	protein coding gene	Chr7:3425164-3454720 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0031409	protein coding gene	Chr7:3624539-3655926 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0032071	protein coding gene	Chr7:3248399-3288005 (+)
PWK/PhJ	MGP_PWKPhJ_G0030392	protein coding gene	Chr7:3420871-3453127 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0030218	protein coding gene	Chr7:2833596-2866215 (+)
WSB/EiJ	MGP_WSBEiJ_G0030759	protein coding gene	Chr7:3400989-3431089 (+)

Human Ortholog

EDDM13, epididymal protein 13

Vertebrate Orthologs

1

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

EDDM13, epididymal protein 13
Links

HGNC:53168

NCBI Gene ID: 100506374

UniProt: A0A1B0GTR0
Chr Location

chr19:56272748-56310454 (+) GRCh38

MGI Vertebrate Homology

Eddm13 stringent orthology
1 human;1 mouse
HCOP

vertebrate homology predictions: EDDM13
Gene Tree

Eddm13

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Phenotype Summary

1 phenotype from 1 allele in 1 genetic background
8 phenotype references

All Mutations and Alleles

18
Endonuclease-mediated

2
Gene trapped

14
Targeted

2
Incidental Mutations

Mutagenetix , APF
Find Mice (IMSR)

34 strains or lines available

Male mice exhibit normal epididymis, sperm, and fecundity.

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All GO Annotations

1
GO References

1

Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

706
cDNA Data

3

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas

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All Sequences

51
RefSeq

16
UniProt

4
CCDS

CCDS51989.1

Ensembl

ENSMUSG00000053367 (Evidence)
NCBI Gene

627821

			Length	Strain/Species	Flank
genomic	627821	NCBI Gene Model \| MGI Sequence Detail	29225	C57BL/6J	± kb
transcript	NM_001177416	RefSeq \| MGI Sequence Detail	963	C57BL/6
polypeptide	E9Q7F5	UniProt \| EBI \| MGI Sequence Detail	164	Not Applicable

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UniProt

4 Sequences
Protein Ontology

PR:000059654 epididymal protein 13

(term hierarchy)

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All nucleic 3

cDNA 3

Microarray probesets 2

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MGI:5828616, MGI:7413979

Summaries

All 23

Gene Ontology 1

Phenotypes 8
Earliest

J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
Latest

J:279041 Noda T, et al., Nine genes abundantly expressed in the epididymis are not essential for male fecundity in mice. Andrology. 2019;

TSS for Eddm13:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr64438	Chr7:6255731-6255754 (+)	107 bp
Tssr64439	Chr7:6255788-6255795 (+)	156 bp
Tssr64440	Chr7:6261581-6261608 (+)	5,959 bp
Tssr64441	Chr7:6263292-6263351 (+)	7,686 bp
Tssr64442	Chr7:6280439-6280453 (+)	24,810 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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