Pou5f1-rs4 Pseudogene Detail

Summary

• Symbol
  Pou5f1-rs4
• Name
  POU domain, class 5, transcription factor 1, related sequence 4
• Synonyms
  Gm5712, Otf3d, Otf3-rs4

• Feature Type
  pseudogene
• IDs
  MGI:101889
  NCBI Gene: 435755
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:129227322-129228361 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 58.05 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  149 from dbSNP Build 142
• Strain Annotations
  18
• RFLP
  2

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_101889	pseudogene	Chr3:129227322-129228364 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012408	pseudogene	Chr3:132089467-132090508 (+)
A/J	MGP_AJ_G0012403	pseudogene	Chr3:127503200-127504242 (+)
AKR/J	MGP_AKRJ_G0012367	pseudogene	Chr3:130804955-130805997 (+)
BALB/cJ	MGP_BALBcJ_G0012386	pseudogene	Chr3:127339123-127340165 (+)
C3H/HeJ	MGP_C3HHeJ_G0012248	pseudogene	Chr3:131199329-131200371 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012700	pseudogene	Chr3:136818366-136819408 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011062	pseudogene	Chr3:122694476-122695511 (+)
CAST/EiJ	MGP_CASTEiJ_G0012017	pseudogene	Chr3:130852017-130853056 (+)
CBA/J	MGP_CBAJ_G0012226	pseudogene	Chr3:141439186-141440228 (+)
DBA/2J	MGP_DBA2J_G0012284	pseudogene	Chr3:126696448-126697490 (+)
FVB/NJ	MGP_FVBNJ_G0012286	pseudogene	Chr3:124274245-124275287 (+)
LP/J	MGP_LPJ_G0012354	pseudogene	Chr3:133600396-133601437 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012290	pseudogene	Chr3:149385229-149386271 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012703	pseudogene	Chr3:130462476-130463517 (+)
PWK/PhJ	MGP_PWKPhJ_G0011856	pseudogene	Chr3:126424951-126425991 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011674	pseudogene	Chr3:128538800-128539841 (+)
WSB/EiJ	MGP_WSBEiJ_G0012044	pseudogene	Chr3:131176535-131177576 (+)

Homology

• Gene Tree
  Pou5f1-rs4
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Pou5f1-rs4
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000105712 (Evidence)
• NCBI Gene
  435755

Representative Sequences			Length	Strain/Species
genomic	435755	NCBI Gene Model | MGI Sequence Detail	1040	C57BL/6J
transcript	NR_033594	RefSeq | MGI Sequence Detail	1040	Not Specified

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

Other
Accession IDs

MGD-MRK-13074, MGD-MRK-18715, MGD-MRK-19413, MGI:3643598

References

• Summaries
  All 13

  Diseases 1

  Phenotypes 4
• Earliest
  J:11320 Siracusa LD, et al., Chromosomal location of the octamer transcription factors, Otf-1, Otf-2, and Otf-3, defines multiple Otf-3-related sequences dispersed in the mouse genome. Genomics. 1991 Jun;10(2):313-26
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426