Gm5123 Pseudogene Detail

Summary

• Symbol
  Gm5123
• Name
  predicted pseudogene 5123

• Feature Type
  pseudogene
• IDs
  MGI:3643621
  NCBI Gene: 331391
• Alliance
  gene page

Location &
Maps

• Sequence Map
  ChrX:17779221-17780057 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 13.18 cM
• Mapping Data
  1 experiment

Strain
Comparison

• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643621	pseudogene	ChrX:17779097-17783808 (-)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0014340	pseudogene	ChrX:12910518-12911354 (-)
AKR/J	MGP_AKRJ_G0014267	pseudogene	ChrX:13242677-13243513 (-)
BALB/cJ	MGP_BALBcJ_G0014290	pseudogene	ChrX:12677301-12678137 (-)
C3H/HeJ	MGP_C3HHeJ_G0014125	pseudogene	ChrX:12927044-12927880 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0014748	pseudogene	ChrX:12807886-12808722 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012544	pseudogene	ChrX:11318735-11319571 (-)
CAST/EiJ	MGP_CASTEiJ_G0013765	pseudogene	ChrX:12148270-12149106 (+)
CBA/J	MGP_CBAJ_G0014108	pseudogene	ChrX:13403366-13404202 (+)
DBA/2J	MGP_DBA2J_G0014186	pseudogene	ChrX:12405232-12406068 (+)
FVB/NJ	MGP_FVBNJ_G0014186	pseudogene	ChrX:12299368-12300204 (+)
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0014718	pseudogene	ChrX:12408942-12409778 (+)
PWK/PhJ	MGP_PWKPhJ_G0013582	pseudogene	ChrX:11988442-11989278 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013372	pseudogene	ChrX:12770198-12771034 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm5123
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000096235 (Evidence)
• NCBI Gene
  331391

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000096235	Ensembl Gene Model | MGI Sequence Detail	837	C57BL/6J
transcript	ENSMUST00000121905	Ensembl | MGI Sequence Detail	837	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;