Vmn2r-ps88 Pseudogene Detail

Summary

• Symbol
  Vmn2r-ps88
• Name
  vomeronasal 2, receptor, pseudogene 88
• Synonyms
  EG209786

• Feature Type
  pseudogene
• IDs
  MGI:3643761
  NCBI Gene: 209786
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr8:3189098-3189968 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 1.82 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  84 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643761	pseudogene	Chr8:3189098-3190006 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Vmn2r-ps88
  

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  5
• RefSeq
  1

• Ensembl
  ENSMUSG00000109369 (Evidence)
• NCBI Gene
  209786

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000109369	Ensembl Gene Model | MGI Sequence Detail	871	C57BL/6J
transcript	ENSMUST00000209168	Ensembl | MGI Sequence Detail	871	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 6
• Earliest
  J:125082 Young JM, et al., V2R gene families degenerated in primates, dog and cow, but expanded in opossum. Trends Genet. 2007 May;23(5):212-5
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582