Gm4989 Pseudogene Detail

Summary

• Symbol
  Gm4989
• Name
  predicted pseudogene 4989

• Feature Type
  pseudogene
• IDs
  MGI:3643860
  NCBI Gene: 245472
• Alliance
  gene page

Location &
Maps

• Sequence Map
  ChrX:73610564-73611309 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 38.03 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  64 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643860	pseudogene	ChrX:73610564-73611312 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014518	pseudogene	ChrX:70377504-70378252 (+)
A/J	MGP_AJ_G0014528	pseudogene	ChrX:70567974-70568722 (+)
AKR/J	MGP_AKRJ_G0014455	pseudogene	ChrX:72458415-72459163 (+)
BALB/cJ	MGP_BALBcJ_G0014482	pseudogene	ChrX:69573046-69573794 (+)
C3H/HeJ	MGP_C3HHeJ_G0014314	pseudogene	ChrX:70862456-70863204 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014951	pseudogene	ChrX:72565092-72565840 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0013948	pseudogene	ChrX:56236198-56236946 (+)
CBA/J	MGP_CBAJ_G0014300	pseudogene	ChrX:74554106-74554854 (+)
DBA/2J	MGP_DBA2J_G0014381	pseudogene	ChrX:70018606-70019354 (+)
FVB/NJ	MGP_FVBNJ_G0014373	pseudogene	ChrX:69369048-69369796 (+)
LP/J	MGP_LPJ_G0014476	pseudogene	ChrX:71171912-71172660 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014411	pseudogene	ChrX:77121076-77121824 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014919	pseudogene	ChrX:70191508-70192256 (+)
PWK/PhJ	MGP_PWKPhJ_G0013752	pseudogene	ChrX:54209102-54209850 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013552	pseudogene	ChrX:57092485-57093228 (+)
WSB/EiJ	MGP_WSBEiJ_G0014022	pseudogene	ChrX:69469013-69469761 (+)

Homology

• Gene Tree
  Gm4989
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000085066 (Evidence)
• NCBI Gene
  245472

Representative Sequences			Length	Strain/Species
genomic	245472	NCBI Gene Model | MGI Sequence Detail	746	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;