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Gm5901 Gene Detail
Summary
  • Symbol
    Gm5901
  • Name
    predicted gene 5901
  • Feature Type
    protein coding gene
  • IDs
    MGI:3643909
    NCBI Gene: 100503879
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:105024245-105027584 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, 55.84 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    116 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3643909
 protein coding gene Chr7:105024245-105027584 (+)
129S1/SvImJ MGP_129S1SvImJ_G0032750
 protein coding gene Chr7:108619108-108622297 (+)
A/J MGP_AJ_G0032730
 protein coding gene Chr7:105782185-105785374 (+)
AKR/J MGP_AKRJ_G0032663
 protein coding gene Chr7:108548724-108551913 (+)
BALB/cJ MGP_BALBcJ_G0032736
 protein coding gene Chr7:105498749-105501938 (+)
C3H/HeJ MGP_C3HHeJ_G0032445
 protein coding gene Chr7:108643961-108647150 (+)
C57BL/6NJ MGP_C57BL6NJ_G0033241
 protein coding gene Chr7:112936022-112939211 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0030225
 protein coding gene Chr7:107761004-107764202 (+)
CAST/EiJ MGP_CASTEiJ_G0031775
 protein coding gene Chr7:100466289-100469483 (+)
CBA/J MGP_CBAJ_G0032419
 protein coding gene Chr7:116716978-116720167 (+)
DBA/2J MGP_DBA2J_G0032572
 protein coding gene Chr7:104053087-104056276 (+)
FVB/NJ MGP_FVBNJ_G0032525
 protein coding gene Chr7:103858794-103861983 (+)
LP/J MGP_LPJ_G0032663
 protein coding gene Chr7:110022876-110026065 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0032557
 protein coding gene Chr7:118322539-118325733 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0033262
 protein coding gene Chr7:107595399-107598588 (+)
PWK/PhJ MGP_PWKPhJ_G0031488
 protein coding gene Chr7:96984198-96987389 (+)
SPRET/EiJ MGP_SPRETEiJ_G0031337
 protein coding gene Chr7:94706879-94710074 (+)
WSB/EiJ MGP_WSBEiJ_G0031892
 protein coding gene Chr7:108235953-108239142 (+)



Homology
more
  • Human Ortholog
    C11orf42, chromosome 11 open reading frame 42
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    C11orf42, chromosome 11 open reading frame 42
  • Links
    NCBI Gene ID: 160298
    neXtProt AC: NX_Q8N5U0
    UniProt: Q8N5U0

  • Chr Location
    11p15.4; chr11:6205557-6211135 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 100503879 NCBI Gene Model | MGI Sequence Detail 3340 C57BL/6J ±  kb
transcript NM_001329995 RefSeq | MGI Sequence Detail 1184 C57BL/6  
polypeptide NP_001369348 RefSeq | MGI Sequence Detail 334 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR031366 Protein of unknown function DUF4663
Molecular
Reagents
less

  • Microarray probesets 1
References
more
  • Summaries
    All 18
    Phenotypes 10
  • Earliest
    J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
  • Latest
    J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory