Gm6548 Pseudogene Detail

Summary

• Symbol
  Gm6548
• Name
  predicted gene 6548

• Feature Type
  pseudogene
• IDs
  MGI:3644071
  NCBI Gene: 625054
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:79158221-79159385 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 49.56 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  117 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644071	pseudogene	Chr17:79157933-79159973 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0011399	pseudogene	Chr17:81685794-81686958 (-)
A/J	MGP_AJ_G0011387	pseudogene	Chr17:79187166-79188330 (-)
AKR/J	MGP_AKRJ_G0011354	pseudogene	Chr17:80385827-80386991 (-)
BALB/cJ	MGP_BALBcJ_G0011369	pseudogene	Chr17:79050335-79051499 (-)
C3H/HeJ	MGP_C3HHeJ_G0011255	pseudogene	Chr17:81292224-81293388 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0011664	pseudogene	Chr17:84667877-84669041 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0011235	pseudogene	Chr17:88198200-88199810 (-)
DBA/2J	MGP_DBA2J_G0011286	pseudogene	Chr17:77704256-77706103 (-)
FVB/NJ	MGP_FVBNJ_G0011290	pseudogene	Chr17:77222938-77224102 (-)
LP/J	MGP_LPJ_G0011359	pseudogene	Chr17:82533665-82535683 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011283	pseudogene	Chr17:88318358-88319521 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0011102	pseudogene	Chr17:81679729-81681989 (-)

Homology

• Gene Tree
  Gm6548
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000091549 (Evidence)
• NCBI Gene
  625054

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000091549	Ensembl Gene Model | MGI Sequence Detail	1165	C57BL/6J
transcript	ENSMUST00000167498	Ensembl | MGI Sequence Detail	1165	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;

TSS for Gm6548:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr149414	Chr17:79160628-79160642 (-)	-1,250 bp