Rpl36-ps4 Pseudogene Detail

Summary

• Symbol
  Rpl36-ps4
• Name
  ribosomal protein L36, pseudogene 4
• Synonyms
  Gm6716

• Feature Type
  pseudogene
• IDs
  MGI:3644086
  NCBI Gene: 626888
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr17:88228521-88228819 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 57.87 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  207 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644086	pseudogene	Chr17:88228488-88228853 (+)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0024066	protein coding gene	Chr17:88424913-88425329 (+)
AKR/J	MGP_AKRJ_G0024035	protein coding gene	Chr17:89898249-89898665 (+)
BALB/cJ	MGP_BALBcJ_G0024067	protein coding gene	Chr17:88254929-88255345 (+)
C3H/HeJ	MGP_C3HHeJ_G0023832	protein coding gene	Chr17:90798383-90798799 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0024512	protein coding gene	Chr17:94524761-94525177 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0023934	protein coding gene	Chr17:86819820-86820236 (+)
FVB/NJ	MGP_FVBNJ_G0023900	protein coding gene	Chr17:86341334-86341750 (+)
LP/J	MGP_LPJ_G0024018	protein coding gene	Chr17:92154872-92155288 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0023928	protein coding gene	Chr17:98357882-98358298 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0024557	protein coding gene	Chr17:90440752-90441168 (+)
PWK/PhJ	MGP_PWKPhJ_G0023056	protein coding gene	Chr17:86494667-86495083 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0022867	protein coding gene	Chr17:87181304-87181786 (+)
WSB/EiJ	MGP_WSBEiJ_G0023377	protein coding gene	Chr17:91256677-91257093 (+)

Homology

• MGI Vertebrate Homology
  Rpl36-ps4 stringent orthology
  1 mouse;1 rat
  
• Gene Tree
  Rpl36-ps4
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000093922 (Evidence)
• NCBI Gene
  626888

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093922	Ensembl Gene Model | MGI Sequence Detail	299	C57BL/6J
transcript	ENSMUST00000179601	Ensembl | MGI Sequence Detail	299	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;