Gm5133 Pseudogene Detail

Summary

• Symbol
  Gm5133
• Name
  predicted pseudogene 5133

• Feature Type
  pseudogene
• IDs
  MGI:3644182
  NCBI Gene: 333563
• Alliance
  gene page

Location &
Maps

• Sequence Map
  ChrX:105349987-105353331 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 47.36 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  272 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644182	pseudogene	ChrX:105349983-105353331 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0040705	pseudogene	ChrX:103144249-103249110 (-)
A/J	MGP_AJ_G0040704	pseudogene	ChrX:102985007-102994833 (-)
AKR/J	MGP_AKRJ_G0040628	pseudogene	ChrX:106213014-106216372 (-)
BALB/cJ	MGP_BALBcJ_G0040696	pseudogene	ChrX:101775309-101788681 (-)
C3H/HeJ	MGP_C3HHeJ_G0040328	pseudogene	ChrX:103530078-103533471 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0041396	pseudogene	ChrX:106066417-106214724 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037520	pseudogene	ChrX:100260107-100466178 (-)
CAST/EiJ	MGP_CASTEiJ_G0039372	pseudogene	ChrX:87741888-87781924 (-)
CBA/J	MGP_CBAJ_G0040298	pseudogene	ChrX:109380522-109383863 (-)
DBA/2J	MGP_DBA2J_G0040513	pseudogene	ChrX:102217115-102256019 (-)
FVB/NJ	MGP_FVBNJ_G0040436	pseudogene	ChrX:101487207-101490855 (-)
LP/J	MGP_LPJ_G0040552	pseudogene	ChrX:103991825-103996138 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0040439	pseudogene	ChrX:114078284-114082802 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0041449	pseudogene	ChrX:102730858-102735498 (-)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0038738	pseudogene	ChrX:88364882-88526480 (-)
WSB/EiJ	MGP_WSBEiJ_G0039618	pseudogene	ChrX:101477383-101528732 (-)

Homology

• Gene Tree
  Gm5133
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000083814 (Evidence)
• NCBI Gene
  333563

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083814	Ensembl Gene Model | MGI Sequence Detail	3345	C57BL/6J
transcript	ENSMUST00000118940	Ensembl | MGI Sequence Detail	1255	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;