Gm7289 Pseudogene Detail

Summary

• Symbol
  Gm7289
• Name
  predicted gene 7289

• Feature Type
  pseudogene
• IDs
  MGI:3644187
  NCBI Gene: 640234
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:84677057-84677969 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 57.53 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  159 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644187	pseudogene	Chr18:84677051-84677969 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0011456	pseudogene	Chr18:85820571-85821455 (-)
A/J	MGP_AJ_G0011458	pseudogene	Chr18:82049250-82051207 (-)
AKR/J	MGP_AKRJ_G0011422	pseudogene	Chr18:84487575-84490036 (-)
BALB/cJ	MGP_BALBcJ_G0011438	pseudogene	Chr18:82243804-82245388 (-)
C3H/HeJ	MGP_C3HHeJ_G0011321	pseudogene	Chr18:84595893-84596654 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0011726	pseudogene	Chr18:87954925-87957995 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0011125	pseudogene	Chr18:84964846-84965743 (-)
CBA/J	MGP_CBAJ_G0011296	pseudogene	Chr18:91107993-91108860 (-)
DBA/2J	MGP_DBA2J_G0011351	pseudogene	Chr18:81570281-81573626 (-)
FVB/NJ	MGP_FVBNJ_G0011356	pseudogene	Chr18:80900329-80906431 (-)
LP/J	MGP_LPJ_G0011419	pseudogene	Chr18:85617841-85621958 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011350	pseudogene	Chr18:92343405-92344302 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011711	pseudogene	Chr18:84702722-84703594 (-)
PWK/PhJ	MGP_PWKPhJ_G0010986	pseudogene	Chr18:81964898-81965750 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0009934	pseudogene	Chr10:36966370-36967068 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm7289
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Transposon induced
  1
• Genomic Mutations
  1 involving Gm7289
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000092056 (Evidence)
• NCBI Gene
  640234

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092056	Ensembl Gene Model | MGI Sequence Detail	913	C57BL/6J
transcript	ENSMUST00000168993	Ensembl | MGI Sequence Detail	734	Not Applicable

References

• Summaries
  All 5

  Phenotypes 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:175597 Overbeek PA, Direct Data Submission for Overbeek Lentiviral Transgenic Lines. MGI Direct Data Submission. 2011;

TSS for Gm7289:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr154138	Chr18:84678061-84678068 (-)	-96 bp