Rpl22-ps1 Pseudogene Detail

Summary

• Symbol
  Rpl22-ps1
• Name
  ribosomal protein L22, pseudogene 1
• Synonyms
  Gm6784

• Feature Type
  pseudogene
• IDs
  MGI:3644276
  NCBI Gene: 627737
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:7904850-7905235 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 3.63 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  109 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644276	pseudogene	ChrX:7904812-7905256 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0014283	pseudogene	ChrX:2675617-2676002 (-)
A/J	MGP_AJ_G0014298	pseudogene	ChrX:2659382-2659767 (-)
AKR/J	MGP_AKRJ_G0014224	pseudogene	ChrX:2755678-2756063 (-)
BALB/cJ	MGP_BALBcJ_G0014248	pseudogene	ChrX:2652982-2653367 (-)
C3H/HeJ	MGP_C3HHeJ_G0014079	pseudogene	ChrX:2727895-2728416 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0014701	pseudogene	ChrX:2762439-2762949 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0013728	pseudogene	ChrX:2620260-2620645 (-)
CBA/J	MGP_CBAJ_G0014062	pseudogene	ChrX:2901102-2901487 (-)
DBA/2J	MGP_DBA2J_G0014145	pseudogene	ChrX:2646004-2646389 (-)
FVB/NJ	MGP_FVBNJ_G0014142	pseudogene	ChrX:2611156-2611541 (-)
LP/J	MGP_LPJ_G0014236	pseudogene	ChrX:2692836-2693221 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014180	pseudogene	ChrX:2859145-2871980 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014671	pseudogene	ChrX:2661263-2661648 (-)
PWK/PhJ	MGP_PWKPhJ_G0013545	pseudogene	ChrX:2581150-2581602 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0013333	pseudogene	ChrX:2632650-2639360 (-)
WSB/EiJ	MGP_WSBEiJ_G0013793	pseudogene	ChrX:2666449-2666834 (-)

Homology

• Gene Tree
  Rpl22-ps1
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000080877 (Evidence)
• NCBI Gene
  627737

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000080877	Ensembl Gene Model | MGI Sequence Detail	386	C57BL/6J
transcript	ENSMUST00000118652	Ensembl | MGI Sequence Detail	386	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Rpl22-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr162845	ChrX:7905244-7905258 (-)	-16 bp