Trav6-1 Gene Detail

Summary

• Symbol
  Trav6-1
• Name
  T cell receptor alpha variable 6-1

• Feature Type
  gene segment
• IDs
  MGI:3644497
  NCBI Gene: 667449
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:52875972-52876419 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.03 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  34 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644497	gene segment	Chr14:52875972-52876419 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002521	gene segment	Chr14:46697338-46697782 (+)
A/J	MGP_AJ_G0002493	gene segment	Chr14:45478423-45478867 (+)
AKR/J	MGP_AKRJ_G0002480	gene segment	Chr14:47128555-47128999 (+)
BALB/cJ	MGP_BALBcJ_G0002489	gene segment	Chr14:45581890-45582334 (+)
C3H/HeJ	MGP_C3HHeJ_G0002465	gene segment	Chr14:46886682-46887126 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002614	gene segment	Chr14:48760639-48761086 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002219	gene segment	Chr14:44583355-44583799 (+)
CAST/EiJ	MGP_CASTEiJ_G0002425	gene segment	Chr14:43848758-43849202 (+)
CBA/J	MGP_CBAJ_G0002456	gene segment	Chr14:50258554-50258998 (+)
DBA/2J	MGP_DBA2J_G0002462	gene segment	Chr14:45239032-45239476 (+)
FVB/NJ	MGP_FVBNJ_G0002476	gene segment	Chr14:44812669-44813116 (+)
LP/J	MGP_LPJ_G0002517	gene segment	Chr14:47323542-47323986 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002446	gene segment	Chr14:49693085-49693532 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002610	gene segment	Chr14:46467982-46468426 (+)
PWK/PhJ	MGP_PWKPhJ_G0002407	gene segment	Chr14:41992838-41993282 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002340	gene segment	Chr14:42507243-42507687 (+)
WSB/EiJ	MGP_WSBEiJ_G0002456	gene segment	Chr14:46787958-46788402 (+)

Homology

• Human Ortholog
  TRAV9-2, T cell receptor alpha variable 9-2

• Vertebrate Orthologs
  3

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  TRAV9-2, T cell receptor alpha variable 9-2
  
• Synonyms
  TCRAV22S1, TCRAV9S2, TRAV92
• Links
  HGNC:12154

  NCBI Gene ID: 28677

  UniProt: A0A087WT02

  
  
• Chr Location
  14q11.2; chr14:21941128-21941657 (+)  GRCh38

---

• MGI Vertebrate Homology
  Trav6-1 stringent orthology
  1 human;1 mouse;2 zebrafish
  
• HCOP
  vertebrate homology predictions: TRAV9-2
• Gene Tree
  Trav6-1
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000076762 (Evidence)
• NCBI Gene
  667449

Representative Sequences			Length	Strain/Species
genomic	667449	NCBI Gene Model | MGI Sequence Detail	448	C57BL/6J
polypeptide	A0A075B5Z8	UniProt | EBI | MGI Sequence Detail	112	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR007110 Immunoglobulin-like domain
  IPR036179 Immunoglobulin-like domain superfamily
  IPR013783 Immunoglobulin-like fold
  IPR013106 Immunoglobulin V-set domain
  IPR051287 T cell receptor variable region

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 7
• Earliest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

TSS for Trav6-1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125469	Chr14:52875909-52875929 (+)	-53 bp