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Gm5493 Gene Detail
Summary
  • Symbol
    Gm5493
  • Name
    predicted gene 5493
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3644511
    NCBI Gene: 433078
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr17:22958918-22970482 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, Syntenic
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    381 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3644511
 lncRNA gene Chr17:22958913-22972647 (+)
129S1/SvImJ MGP_129S1SvImJ_G0023249
 protein coding gene Chr17:21605878-21621056 (+)
A/J MGP_AJ_G0023213
 protein coding gene Chr17:20939450-20954331 (+)
AKR/J MGP_AKRJ_G0023181
 protein coding gene Chr17:20954725-20964896 (+)
BALB/cJ MGP_BALBcJ_G0023213
 protein coding gene Chr17:21109120-21118356 (+)
C3H/HeJ MGP_C3HHeJ_G0022975
 protein coding gene Chr17:21360520-21372380 (+)
C57BL/6NJ MGP_C57BL6NJ_G0023658
 protein coding gene Chr17:22423648-22440424 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0021142
 protein coding gene Chr17:18633715-18640722 (+)
CAST/EiJ MGP_CASTEiJ_G0022482
 protein coding gene Chr17:21206563-21218775 (+)
CBA/J MGP_CBAJ_G0022950
 protein coding gene Chr17:23203985-23219117 (+)
DBA/2J MGP_DBA2J_G0023083
 protein coding gene Chr17:20550965-20561128 (+)
FVB/NJ MGP_FVBNJ_G0023050
 protein coding gene Chr17:20296783-20312443 (+)
LP/J MGP_LPJ_G0023160
 protein coding gene Chr17:21849647-21859064 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0023069
 protein coding gene Chr17:23027134-23044351 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0023697
 protein coding gene Chr17:21314475-21330058 (+)
PWK/PhJ MGP_PWKPhJ_G0022232
 protein coding gene Chr17:19368956-19385675 (+)
SPRET/EiJ MGP_SPRETEiJ_G0022051
 protein coding gene Chr17:19546561-19567325 (+)
WSB/EiJ MGP_WSBEiJ_G0022546
 protein coding gene Chr17:21367039-21373865 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    16 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
Sequences &
Gene Models
less
  • All Sequences
    26
  • RefSeq
    4
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000098164 Ensembl Gene Model | MGI Sequence Detail 11565 C57BL/6J ±  kb
transcript ENSMUST00000182063 Ensembl | MGI Sequence Detail 1951 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1
References
more
  • Summaries
    All 22
    Phenotypes 16
  • Earliest
    J:84774 Dunn LC, Studies of the genetic variability in populations of wild house mice. II. Analysis of eight additional alleles at locus T. Genetics. 1957;42:299-311
  • Latest
    J:273736 Charron Y, et al., Two isoforms of the RAC-specific guanine nucleotide exchange factor TIAM2 act oppositely on transmission ratio distortion by the mouse t-haplotype. PLoS Genet. 2019 Feb;15(2):e1007964
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/05/2024
MGI 6.24 		The Jackson Laboratory