Gm5402 Pseudogene Detail

Summary

• Symbol
  Gm5402
• Name
  predicted gene 5402

• Feature Type
  pseudogene
• IDs
  MGI:3644522
  NCBI Gene: 385500
• Alliance
  gene page

Location &
Maps

• Sequence Map
  ChrX:93715109-93716726 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 41.65 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  100 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644522	pseudogene	ChrX:93715106-93716736 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0014626	pseudogene	ChrX:91098604-91100221 (-)
A/J	MGP_AJ_G0014635	pseudogene	ChrX:91182156-91183773 (-)
AKR/J	MGP_AKRJ_G0014558	pseudogene	ChrX:93594992-93596609 (-)
BALB/cJ	MGP_BALBcJ_G0014583	pseudogene	ChrX:89905730-89907347 (-)
C3H/HeJ	MGP_C3HHeJ_G0014420	pseudogene	ChrX:91455886-91457503 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015066	pseudogene	ChrX:93877154-93878771 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0014045	pseudogene	ChrX:76114776-76116393 (-)
CBA/J	MGP_CBAJ_G0014406	pseudogene	ChrX:96582561-96584178 (-)
DBA/2J	MGP_DBA2J_G0014488	pseudogene	ChrX:90405430-90407047 (-)
FVB/NJ	MGP_FVBNJ_G0014475	pseudogene	ChrX:89815575-89817192 (-)
LP/J	MGP_LPJ_G0014586	pseudogene	ChrX:91914243-91915860 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014514	pseudogene	ChrX:100942893-100944510 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015033	pseudogene	ChrX:90797999-90799616 (-)
PWK/PhJ	MGP_PWKPhJ_G0013852	pseudogene	ChrX:73882490-73884107 (-)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0014123	pseudogene	ChrX:89606651-89608244 (-)

Homology

• Gene Tree
  Gm5402
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000083438 (Evidence)
• NCBI Gene
  385500

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083438	Ensembl Gene Model | MGI Sequence Detail	1618	C57BL/6J
transcript	ENSMUST00000119588	Ensembl | MGI Sequence Detail	1618	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;