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Ct47 Gene Detail
Summary
  • Symbol
    Ct47
  • Name
    cancer/testis antigen 47
  • Synonyms
    Gm6268
Location &
Maps
more
  • Sequence Map
    ChrX:35667130-35668307 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 20.80 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    106 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3644556
 protein coding gene ChrX:35664933-35668308 (+)
129S1/SvImJ MGP_129S1SvImJ_G0035619
 protein coding gene ChrX:31316347-31317525 (+)
A/J MGP_AJ_G0035596
 protein coding gene ChrX:31403807-31404985 (+)
AKR/J MGP_AKRJ_G0035529
 protein coding gene ChrX:32063549-32064709 (+)
BALB/cJ MGP_BALBcJ_G0035589
 protein coding gene ChrX:31142230-31143408 (+)
C3H/HeJ MGP_C3HHeJ_G0035307
 protein coding gene ChrX:31636152-31637330 (+)
C57BL/6NJ MGP_C57BL6NJ_G0036125
 protein coding gene ChrX:31938127-31939305 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0032987
 protein coding gene ChrX:29542876-29544164 (+)
CAST/EiJ MGP_CASTEiJ_G0034598
 protein coding gene ChrX:19795345-19796523 (+)
CBA/J MGP_CBAJ_G0035276
 protein coding gene ChrX:32802509-32803687 (+)
DBA/2J MGP_DBA2J_G0035428
 protein coding gene ChrX:31224466-31225644 (+)
FVB/NJ MGP_FVBNJ_G0035374
 protein coding gene ChrX:30983056-30984234 (+)
LP/J MGP_LPJ_G0035510
 protein coding gene ChrX:31674881-31676059 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035418
 protein coding gene ChrX:33261465-33262643 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0036132
 protein coding gene ChrX:31293329-31294507 (+)
PWK/PhJ MGP_PWKPhJ_G0034299
 protein coding gene ChrX:19288403-19289594 (+)
SPRET/EiJ MGP_SPRETEiJ_G0034140
 protein coding gene ChrX:20292324-20293492 (+)
WSB/EiJ MGP_WSBEiJ_G0034733
 protein coding gene ChrX:31086475-31087669 (+)



Homology
more
  • Human Ortholog
    CT47A1, cancer/testis antigen family 47 member A1
  • Vertebrate Orthologs
    14
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CT47A1, cancer/testis antigen family 47 member A1
  • Synonyms
    CT47.1
  • Links
    NCBI Gene ID: 728096
    neXtProt AC: NX_Q5JQC4
    UniProt: Q5JQC4

  • Chr Location
    Xq24; chrX:120982476-120985760 (-)  GRCh38
  • Human Ortholog
    CT47A10, cancer/testis antigen family 47 member A10
  • Synonyms
    CT47, CT47.10
  • Links
    NCBI Gene ID: 728036
    neXtProt AC: NX_Q5JQC4
    UniProt: Q5JQC4

  • Chr Location
    Xq24; chrX:120938701-120942023 (-)  GRCh38
  • Human Ortholog
    CT47A11, cancer/testis antigen family 47 member A11
  • Synonyms
    CT47.11
  • Links
    NCBI Gene ID: 255313
    neXtProt AC: NX_Q5JQC4
    UniProt: Q5JQC4

  • Chr Location
    Xq24
  • Human Ortholog
    CT47A12, cancer/testis antigen family 47 member A12
  • Synonyms
    CT47, CT47.12
  • Links
    NCBI Gene ID: 100507170
    neXtProt AC: NX_Q5JQC4
    UniProt: Q5JQC4

  • Chr Location
    X
  • Human Ortholog
    CT47A2, cancer/testis antigen family 47 member A2
  • Synonyms
    CT47.2
  • Links
    NCBI Gene ID: 728090
    neXtProt AC: NX_Q5JQC4
    UniProt: Q5JQC4

  • Chr Location
    Xq24; chrX:120977606-120980928 (-)  GRCh38
  • Human Ortholog
    CT47A3, cancer/testis antigen family 47 member A3
  • Synonyms
    CT47.3
  • Links
    NCBI Gene ID: 728082
    neXtProt AC: NX_Q5JQC4
    UniProt: Q5JQC4

  • Chr Location
    Xq24; chrX:120972746-120976068 (-)  GRCh38
  • Human Ortholog
    CT47A4, cancer/testis antigen family 47 member A4
  • Synonyms
    CT47.4
  • Links
    NCBI Gene ID: 728075
    neXtProt AC: NX_Q5JQC4
    UniProt: Q5JQC4

  • Chr Location
    Xq24; chrX:120967886-120971208 (-)  GRCh38
  • Human Ortholog
    CT47A5, cancer/testis antigen family 47 member A5
  • Synonyms
    CT47.5
  • Links
    NCBI Gene ID: 728072
    neXtProt AC: NX_Q5JQC4
    UniProt: Q5JQC4

  • Chr Location
    Xq24; chrX:120963026-120966348 (-)  GRCh38
  • Human Ortholog
    CT47A6, cancer/testis antigen family 47 member A6
  • Synonyms
    CT47.6
  • Links
    NCBI Gene ID: 728062
    neXtProt AC: NX_Q5JQC4
    UniProt: Q5JQC4

  • Chr Location
    Xq24; chrX:120958165-120961487 (-)  GRCh38
  • Human Ortholog
    CT47A7, cancer/testis antigen family 47 member A7
  • Synonyms
    CT47.7
  • Links
    NCBI Gene ID: 653282
    neXtProt AC: NX_Q5JQC4
    UniProt: Q5JQC4

  • Chr Location
    Xq24; chrX:120953282-120956600 (-)  GRCh38
  • Human Ortholog
    CT47A8, cancer/testis antigen family 47 member A8
  • Synonyms
    CT47.8
  • Links
    NCBI Gene ID: 728049
    neXtProt AC: NX_Q5JQC4
    UniProt: Q5JQC4

  • Chr Location
    Xq24; chrX:120948422-120951744 (-)  GRCh38
  • Human Ortholog
    CT47A9, cancer/testis antigen family 47 member A9
  • Synonyms
    CT47.9
  • Links
    NCBI Gene ID: 728042
    neXtProt AC: NX_Q5JQC4
    UniProt: Q5JQC4

  • Chr Location
    Xq24; chrX:120943561-120946883 (-)  GRCh38
  • Human Ortholog
    CT47B1, cancer/testis antigen family 47 member B1
  • Synonyms
    CT47.13, CT47A13
  • Links
    NCBI Gene ID: 643311
    neXtProt AC: NX_P0C2W7
    UniProt: P0C2W7

  • Chr Location
    Xq24; chrX:120872607-120875866 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
Sequences &
Gene Models
less
  • All Sequences
    25
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 621901 NCBI Gene Model | MGI Sequence Detail 1178 C57BL/6J ±  kb
transcript NR_044989 RefSeq | MGI Sequence Detail 300 Not Specified  
polypeptide A2A3U9 UniProt | EBI | MGI Sequence Detail 297 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    1 Sequence
  • InterPro Domains
    IPR028930 Cancer/testis antigen 47
  • GlyGen
    A2A3U9 1 site, 1 N-linked glycan (1 site)
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1
Other
Accession IDs
less
MGI:7444834
References
more
  • Summaries
    All 10
    Phenotypes 3
  • Earliest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory