Gm8730 Pseudogene Detail

Summary

• Symbol
  Gm8730
• Name
  predicted pseudogene 8730

• Feature Type
  pseudogene
• IDs
  MGI:3644565
  NCBI Gene: 667618
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:103591477-103592430 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 52.77 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  189 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644565	pseudogene	Chr8:103591407-103592504 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0020725	protein coding gene	Chr13:67993066-67994088 (+)
A/J	MGP_AJ_G0020679	protein coding gene	Chr13:65574309-65575323 (+)
AKR/J	MGP_AKRJ_G0020654	protein coding gene	Chr13:67758341-67761304 (+)
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0020471	protein coding gene	Chr13:67387425-67388541 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0021114	protein coding gene	Chr13:70421497-70422220 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0025298	protein coding gene	Chr3:87448665-87449620 (+)
CAST/EiJ	MGP_CASTEiJ_G0016686	protein coding gene	Chr10:75231428-75232030 (+)
CBA/J	MGP_CBAJ_G0020429	protein coding gene	Chr13:72992781-72993793 (+)
DBA/2J	MGP_DBA2J_G0020556	protein coding gene	Chr13:65463958-65464762 (+)
FVB/NJ	MGP_FVBNJ_G0026454	protein coding gene	Chr2:148294419-148295788 (+)
LP/J	MGP_LPJ_G0027467	protein coding gene	Chr3:95003221-95004304 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0020563	protein coding gene	Chr13:71790922-71793359 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0027136	protein coding gene	Chr2:154914199-154915538 (+)
PWK/PhJ	MGP_PWKPhJ_G0026421	protein coding gene	Chr3:90026352-90028299 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0021799	protein coding gene	Chr16:84725737-84726470 (+)
WSB/EiJ	MGP_WSBEiJ_G0026775	protein coding gene	Chr3:93064714-93065811 (+)

Homology

• Gene Tree
  Gm8730
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000063696 (Evidence)
• NCBI Gene
  667618

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000063696	Ensembl Gene Model | MGI Sequence Detail	954	C57BL/6J
transcript	ENSMUST00000076373	Ensembl | MGI Sequence Detail	954	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm8730:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr82591	Chr8:103592500-103592508 (-)	-74 bp