Gm5407 Pseudogene Detail

Summary

• Symbol
  Gm5407
• Name
  predicted gene 5407

• Feature Type
  pseudogene
• IDs
  MGI:3644612
  NCBI Gene: 386061
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr16:49117014-49118261 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 30.83 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  303 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644612	pseudogene	Chr16:49116760-49119025 (-)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0022828	protein coding gene	Chr16:44844249-44845031 (+)
AKR/J	MGP_AKRJ_G0022811	protein coding gene	Chr16:47600786-47601693 (-)
BALB/cJ	MGP_BALBcJ_G0022829	protein coding gene	Chr16:44894551-44895413 (+)
C3H/HeJ	MGP_C3HHeJ_G0022593	protein coding gene	Chr16:46435173-46435845 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0023287	protein coding gene	Chr16:49408358-49410301 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0019834	protein coding gene	Chr15:57453102-57453960 (-)
CAST/EiJ	MGP_CASTEiJ_G0022118	protein coding gene	Chr16:46685277-46685949 (+)
CBA/J	MGP_CBAJ_G0022565	protein coding gene	Chr16:49980092-49980714 (+)
DBA/2J	MGP_DBA2J_G0022707	protein coding gene	Chr16:45791068-45791975 (-)
FVB/NJ	MGP_FVBNJ_G0031087	protein coding gene	Chr6:124567275-124571011 (-)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0019858	protein coding gene	Chr12:106018552-106019098 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0023302	protein coding gene	Chr16:47625961-47626707 (-)
PWK/PhJ	MGP_PWKPhJ_G0021749	protein coding gene	Chr16:29739871-29750495 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014818	protein coding gene	Chr1:30443758-30444363 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm5407
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00000058176 (Evidence)
• NCBI Gene
  386061

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000058176	Ensembl Gene Model | MGI Sequence Detail	1248	C57BL/6J
transcript	ENSMUST00000080694	Ensembl | MGI Sequence Detail	1248	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 2

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;