Gm5558 Pseudogene Detail

Summary

• Symbol
  Gm5558
• Name
  predicted gene 5558

• Feature Type
  pseudogene
• IDs
  MGI:3644616
  NCBI Gene: 433914
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:91954438-91954932 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 45.23 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  149 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644616	pseudogene	Chr5:91954232-91954975 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0013180	pseudogene	Chr5:92931728-92932222 (-)
A/J	no annotation
AKR/J	MGP_AKRJ_G0013132	pseudogene	Chr5:92168282-92168776 (-)
BALB/cJ	MGP_BALBcJ_G0013145	pseudogene	Chr5:90147703-90148197 (-)
C3H/HeJ	MGP_C3HHeJ_G0012992	pseudogene	Chr5:92569922-92570416 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013507	pseudogene	Chr5:96642049-96642543 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0012964	pseudogene	Chr5:99945310-99945804 (-)
DBA/2J	MGP_DBA2J_G0013044	pseudogene	Chr5:89310071-89310565 (-)
FVB/NJ	MGP_FVBNJ_G0013047	pseudogene	Chr5:88159773-88160267 (-)
LP/J	MGP_LPJ_G0013633	pseudogene	Chr6:126540250-126540752 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013065	pseudogene	Chr5:104916618-104917112 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013510	pseudogene	Chr5:91712262-91712756 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm5558
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Gene trapped
  1
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm5558
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16
• RefSeq
  1

• Ensembl
  ENSMUSG00000096726 (Evidence)
• NCBI Gene
  433914

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000096726	Ensembl Gene Model | MGI Sequence Detail	495	C57BL/6J
transcript	ENSMUST00000178933	Ensembl | MGI Sequence Detail	495	Not Applicable

References

• Summaries
  All 12

  Phenotypes 8
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:85162 Hansen J, et al., A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Proc Natl Acad Sci U S A. 2003 Aug 19;100(17):9918-22

TSS for Gm5558:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr51826	Chr5:91954977-91954988 (-)	-51 bp