Gm6542 Pseudogene Detail

Summary

• Symbol
  Gm6542
• Name
  predicted gene 6542

• Feature Type
  pseudogene
• IDs
  MGI:3644649
  NCBI Gene: 624979
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:36743011-36743782 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 19.46 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  67 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644649	pseudogene	Chr18:36742942-36743978 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011432	pseudogene	Chr18:35016502-35017273 (+)
A/J	MGP_AJ_G0011426	pseudogene	Chr18:33779766-33780537 (+)
AKR/J	MGP_AKRJ_G0011390	pseudogene	Chr18:34727075-34727846 (+)
BALB/cJ	MGP_BALBcJ_G0011405	pseudogene	Chr18:33831469-33832240 (+)
C3H/HeJ	MGP_C3HHeJ_G0011293	pseudogene	Chr18:34791294-34793317 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011698	pseudogene	Chr18:36240961-36241732 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0011269	pseudogene	Chr18:37322148-37322901 (+)
DBA/2J	MGP_DBA2J_G0011322	pseudogene	Chr18:33402816-33403587 (+)
FVB/NJ	MGP_FVBNJ_G0011327	pseudogene	Chr18:33109899-33110670 (+)
LP/J	MGP_LPJ_G0011392	pseudogene	Chr18:35046255-35047026 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011319	pseudogene	Chr18:38531176-38531947 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011683	pseudogene	Chr18:34594467-34595339 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0011131	pseudogene	Chr18:34520731-34521468 (+)

Homology

• Gene Tree
  Gm6542
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000085172 (Evidence)
• NCBI Gene
  624979

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085172	Ensembl Gene Model | MGI Sequence Detail	772	C57BL/6J
transcript	ENSMUST00000153606	Ensembl | MGI Sequence Detail	772	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:60011 Hopitzan A, et al., The mouse psma1 gene coding for the alpha-type C2 proteasome subunit: structural and functional analysis, mapping, and colocalization with pde3b on mouse chromosome 7. Genomics. 2000 Jun 15;66(3):313-23

TSS for Gm6542:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr150642	Chr18:36743469-36743496 (+)	472 bp