Gm5305 Pseudogene Detail

Summary

• Symbol
  Gm5305
• Name
  predicted gene 5305
• Synonyms
  Gm44218

• Feature Type
  pseudogene
• IDs
  MGI:3644734
  NCBI Gene: 102633308
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:49519916-49520661 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 23.88 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  157 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644734	pseudogene	Chr6:49519913-49540101 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0013453	pseudogene	Chr6:48584809-48585554 (-)
A/J	MGP_AJ_G0013437	pseudogene	Chr6:46355055-46355800 (-)
AKR/J	MGP_AKRJ_G0013401	pseudogene	Chr6:47987973-47988718 (-)
BALB/cJ	MGP_BALBcJ_G0013414	pseudogene	Chr6:46694224-46694969 (-)
C3H/HeJ	MGP_C3HHeJ_G0013265	pseudogene	Chr6:47994922-47995667 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013799	pseudogene	Chr6:49725324-49726069 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0012973	pseudogene	Chr6:47708904-47709649 (-)
CBA/J	MGP_CBAJ_G0013234	pseudogene	Chr6:51786119-51786864 (-)
DBA/2J	MGP_DBA2J_G0013318	pseudogene	Chr6:46262559-46263304 (-)
FVB/NJ	MGP_FVBNJ_G0013314	pseudogene	Chr6:45903159-45903904 (-)
LP/J	MGP_LPJ_G0013388	pseudogene	Chr6:48545270-48546015 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013332	pseudogene	Chr6:54543031-54543776 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013795	pseudogene	Chr6:47870818-47871563 (-)
PWK/PhJ	MGP_PWKPhJ_G0012783	pseudogene	Chr6:45811147-45812003 (-)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0013016	pseudogene	Chr6:47848937-47849682 (-)

Homology

• Gene Tree
  Gm5305
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000108266 (Evidence)
• NCBI Gene
  102633308

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108266	Ensembl Gene Model | MGI Sequence Detail	746	C57BL/6J
transcript	ENSMUST00000204010	Ensembl | MGI Sequence Detail	746	Not Applicable

Other
Accession IDs

MGI:5690610

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm5305:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr60892	Chr6:49520702-49520704 (-)	-42 bp