Gm6565 Pseudogene Detail

Summary

• Symbol
  Gm6565
• Name
  predicted gene 6565

• Feature Type
  pseudogene
• IDs
  MGI:3644755
  NCBI Gene: 100503412
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:100581644-100582081 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 46.84 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  96 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644755	pseudogene	Chr6:100581519-100583368 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011707	pseudogene	Chr2:77673446-77673858 (-)
A/J	MGP_AJ_G0012510	pseudogene	Chr4:8699885-8700290 (-)
AKR/J	MGP_AKRJ_G0012472	pseudogene	Chr4:8807511-8807916 (-)
BALB/cJ	MGP_BALBcJ_G0012493	pseudogene	Chr4:8634825-8635230 (-)
C3H/HeJ	MGP_C3HHeJ_G0012354	pseudogene	Chr4:8988402-8988807 (-)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0011358	pseudogene	Chr2:77227064-77227469 (-)
CBA/J	MGP_CBAJ_G0011544	pseudogene	Chr2:82921829-82922242 (-)
DBA/2J	MGP_DBA2J_G0012389	pseudogene	Chr4:8568716-8569121 (-)
FVB/NJ	MGP_FVBNJ_G0012388	pseudogene	Chr4:8386855-8387260 (-)
LP/J	MGP_LPJ_G0011664	pseudogene	Chr2:77564652-77565065 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011601	pseudogene	Chr2:84737069-84737482 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011972	pseudogene	Chr2:76792292-76792705 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0011384	pseudogene	Chr2:77256415-77256828 (-)

Homology

• Gene Tree
  Gm6565
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000079224 (Evidence)
• NCBI Gene
  100503412

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000079224	Ensembl Gene Model | MGI Sequence Detail	438	C57BL/6J
transcript	ENSMUST00000121217	Ensembl | MGI Sequence Detail	438	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm6565:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr57992	Chr6:100581617-100581624 (+)	-23 bp