Gm16458 Pseudogene Detail

Summary

• Symbol
  Gm16458
• Name
  predicted pseudogene 16458

• Feature Type
  pseudogene
• IDs
  MGI:3644776
  NCBI Gene: 628976
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:77102996-77110193 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 38.33 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  284 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644776	pseudogene	ChrX:77102996-77110193 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0040692	pseudogene	ChrX:73909119-73915832 (+)
A/J	MGP_AJ_G0040691	pseudogene	ChrX:74194089-74205734 (+)
AKR/J	MGP_AKRJ_G0040613	pseudogene	ChrX:76155582-76163011 (+)
BALB/cJ	MGP_BALBcJ_G0040681	pseudogene	ChrX:73126841-73139151 (+)
C3H/HeJ	MGP_C3HHeJ_G0040317	pseudogene	ChrX:74378795-74389627 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0041383	pseudogene	ChrX:76246044-76253234 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037508	pseudogene	ChrX:73458042-73463862 (+)
CAST/EiJ	MGP_CASTEiJ_G0039359	pseudogene	ChrX:59585939-59597899 (+)
CBA/J	MGP_CBAJ_G0040283	pseudogene	ChrX:78283787-78292991 (+)
DBA/2J	MGP_DBA2J_G0040499	pseudogene	ChrX:73611287-73618650 (+)
FVB/NJ	MGP_FVBNJ_G0040417	pseudogene	ChrX:72863976-72871187 (+)
LP/J	MGP_LPJ_G0040536	pseudogene	ChrX:74793997-74800723 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0040420	pseudogene	ChrX:81033930-81040902 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0041432	pseudogene	ChrX:73750120-73757319 (+)
PWK/PhJ	MGP_PWKPhJ_G0039007	pseudogene	ChrX:57726083-57732419 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0038723	pseudogene	ChrX:60424629-60430236 (+)
WSB/EiJ	MGP_WSBEiJ_G0039604	pseudogene	ChrX:72932774-72940713 (+)

Homology

• Gene Tree
  Gm16458
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000080890 (Evidence)
• NCBI Gene
  628976

Representative Sequences			Length	Strain/Species
genomic	628976	NCBI Gene Model | MGI Sequence Detail	7198	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm16458:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr5641	ChrX:77102944-77102946 (+)	-51 bp