Gm6278 Pseudogene Detail

Summary

• Symbol
  Gm6278
• Name
  predicted gene 6278

• Feature Type
  pseudogene
• IDs
  MGI:3644862
  NCBI Gene: 622000
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr16:85441140-85441911 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 47.90 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  179 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644862	pseudogene	Chr16:85441140-85441911 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm6278
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Targeted
  1
• Genomic Mutations
  2 involving Gm6278
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  5
• RefSeq
  1

• Ensembl
  ENSMUSG00000116972 (Evidence)
• NCBI Gene
  622000

Representative Sequences			Length	Strain/Species
genomic	622000	NCBI Gene Model | MGI Sequence Detail	772	C57BL/6J

References

• Summaries
  All 7

  Phenotypes 3
• Earliest
  J:117029 Davisson M, et al., Impact of trisomy on fertility and meiosis in male mice. Hum Reprod. 2007 Feb;22(2):468-76
• Latest
  J:223383 Arbogast T, et al., Deletion of the App-Runx1 region in mice models human partial monosomy 21. Dis Model Mech. 2015 Jun;8(6):623-34