Rpsa-ps1 Pseudogene Detail

Summary

• Symbol
  Rpsa-ps1
• Name
  ribosomal protein SA, pseudogene 1
• Synonyms
  Gm7549

• Feature Type
  pseudogene
• IDs
  MGI:3644886
  NCBI Gene: 665237
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:163451362-163452247 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 70.92 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  132 from dbSNP Build 142
• Strain Annotations
  3

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644886	pseudogene	Chr1:163451289-163452316 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010418	pseudogene	Chr1:169025648-169027903 (+)
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0010656	pseudogene	Chr1:174698569-174699488 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Rpsa-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Rpsa-ps1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  7
• RefSeq
  1

• Ensembl
  ENSMUSG00000102117 (Evidence)
• NCBI Gene
  665237

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102117	Ensembl Gene Model | MGI Sequence Detail	886	C57BL/6J
transcript	ENSMUST00000191040	Ensembl | MGI Sequence Detail	886	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;