Gm6623 Pseudogene Detail

Summary

• Symbol
  Gm6623
• Name
  predicted gene 6623

• Feature Type
  pseudogene
• IDs
  MGI:3644901
  NCBI Gene: 625785
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr17:36490006-36490549 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 18.98 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  29 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644901	pseudogene	Chr17:36489669-36492256 (+)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0011335	pseudogene	Chr17:35287960-35288503 (+)
AKR/J	MGP_AKRJ_G0011299	pseudogene	Chr17:35714511-35715054 (+)
BALB/cJ	MGP_BALBcJ_G0011312	pseudogene	Chr17:35453347-35453890 (+)
C3H/HeJ	MGP_C3HHeJ_G0011200	pseudogene	Chr17:36209812-36210355 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011603	pseudogene	Chr17:37939506-37940049 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010170	pseudogene	Chr17:32903081-32903631 (+)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0011180	pseudogene	Chr17:39499844-39500388 (+)
DBA/2J	MGP_DBA2J_G0011232	pseudogene	Chr17:34593567-34594111 (+)
FVB/NJ	MGP_FVBNJ_G0011233	pseudogene	Chr17:34355091-34355634 (+)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0011228	pseudogene	Chr17:38284538-38285081 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011580	pseudogene	Chr17:36010003-36010547 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm6623
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  1
• Targeted
  1
• Genomic Mutations
  1 involving Gm6623
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  1

• Ensembl
  ENSMUSG00000092374 (Evidence)
• NCBI Gene
  625785

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092374	Ensembl Gene Model | MGI Sequence Detail	544	C57BL/6J
transcript	ENSMUST00000173570	Ensembl | MGI Sequence Detail	544	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
• Latest
  J:190754 Ermakova O, et al., Construction and phenotypic analysis of mice carrying a duplication of the major histocompatibility class I (MHC-I) locus. Mamm Genome. 2012 Aug;23(7-8):443-53