Cd9-ps Pseudogene Detail

Summary

• Symbol
  Cd9-ps
• Name
  Cd9 antigen, pseudogene
• Synonyms
  EG668579

• Feature Type
  pseudogene
• IDs
  MGI:3645134
  NCBI Gene: 668579
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:41332082-41332731 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 28.25 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  132 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645134	pseudogene	Chr7:41331675-41332812 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0013882	pseudogene	Chr7:41466835-41467484 (-)
A/J	MGP_AJ_G0013901	pseudogene	Chr7:40519683-40520332 (-)
AKR/J	MGP_AKRJ_G0013836	pseudogene	Chr7:41783130-41783779 (-)
BALB/cJ	MGP_BALBcJ_G0013866	pseudogene	Chr7:40776500-40777149 (-)
C3H/HeJ	MGP_C3HHeJ_G0013693	pseudogene	Chr7:42390168-42390817 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0014293	pseudogene	Chr7:43540769-43541418 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0013361	pseudogene	Chr7:33542647-33543296 (-)
CBA/J	MGP_CBAJ_G0013674	pseudogene	Chr7:44855493-44856142 (-)
DBA/2J	MGP_DBA2J_G0013755	pseudogene	Chr7:40415988-40416625 (-)
FVB/NJ	MGP_FVBNJ_G0013752	pseudogene	Chr7:40098953-40117875 (-)
LP/J	MGP_LPJ_G0013827	pseudogene	Chr7:41954921-41955570 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013778	pseudogene	Chr7:43728159-43728796 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014248	pseudogene	Chr7:41029910-41030559 (-)
PWK/PhJ	MGP_PWKPhJ_G0013169	pseudogene	Chr7:33511318-33511955 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0012783	pseudogene	Chr6:125310274-125349386 (-)
WSB/EiJ	MGP_WSBEiJ_G0013416	pseudogene	Chr7:41479645-41480282 (-)

Homology

• Gene Tree
  Cd9-ps
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  2

• Ensembl
  ENSMUSG00000092193 (Evidence)
• NCBI Gene
  668579

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092193	Ensembl Gene Model | MGI Sequence Detail	650	C57BL/6J
transcript	ENSMUST00000174687	Ensembl | MGI Sequence Detail	650	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:125082 Young JM, et al., V2R gene families degenerated in primates, dog and cow, but expanded in opossum. Trends Genet. 2007 May;23(5):212-5

TSS for Cd9-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr72116	Chr7:41332418-41332428 (-)	308 bp