Gm9439 Pseudogene Detail

Summary

• Symbol
  Gm9439
• Name
  predicted gene 9439

• Feature Type
  pseudogene
• IDs
  MGI:3645164
  NCBI Gene: 668997
• Alliance
  gene page

Location &
Maps

• Sequence Map
  ChrX:21370293-21371705 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 16.72 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  119 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645164	pseudogene	ChrX:21370284-21371888 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014348	pseudogene	ChrX:16419960-16421348 (+)
A/J	MGP_AJ_G0014358	pseudogene	ChrX:16517073-16518485 (+)
AKR/J	MGP_AKRJ_G0014284	pseudogene	ChrX:17107592-17109077 (+)
BALB/cJ	MGP_BALBcJ_G0014308	pseudogene	ChrX:16262330-16263742 (+)
C3H/HeJ	MGP_C3HHeJ_G0014143	pseudogene	ChrX:16632788-16634170 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014768	pseudogene	ChrX:16891067-16893138 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012555	pseudogene	ChrX:14798794-14799760 (+)
CAST/EiJ	MGP_CASTEiJ_G0013783	pseudogene	ChrX:15923786-15925971 (+)
CBA/J	MGP_CBAJ_G0014127	pseudogene	ChrX:17640184-17641483 (+)
DBA/2J	MGP_DBA2J_G0014205	pseudogene	ChrX:16337266-16338654 (+)
FVB/NJ	MGP_FVBNJ_G0014206	pseudogene	ChrX:16213732-16215097 (+)
LP/J	MGP_LPJ_G0014299	pseudogene	ChrX:16698811-16700392 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014241	pseudogene	ChrX:17914903-17916315 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014739	pseudogene	ChrX:16349684-16351096 (+)
PWK/PhJ	MGP_PWKPhJ_G0013599	pseudogene	ChrX:15484348-15487429 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013391	pseudogene	ChrX:16359770-16361549 (+)
WSB/EiJ	MGP_WSBEiJ_G0013848	pseudogene	ChrX:16207314-16208887 (+)

Homology

• Gene Tree
  Gm9439
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000081641 (Evidence)
• NCBI Gene
  668997

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081641	Ensembl Gene Model | MGI Sequence Detail	1413	C57BL/6J
transcript	ENSMUST00000119554	Ensembl | MGI Sequence Detail	973	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;