Gm5841 Pseudogene Detail

Summary

• Symbol
  Gm5841
• Name
  predicted gene 5841

• Feature Type
  pseudogene
• IDs
  MGI:3645248
  NCBI Gene: 545500
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:8392591-8394767 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 2.15 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  250 from dbSNP Build 142
• Strain Annotations
  5

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645248	pseudogene	Chr3:8392382-8394967 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	MGP_AKRJ_G0011963	pseudogene	Chr3:5280961-5299691 (+)
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0011857	pseudogene	Chr3:5535340-5541045 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	MGP_PWKPhJ_G0012180	pseudogene	Chr4:93562497-93569400 (+)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0012384	pseudogene	Chr4:98381854-98388416 (+)

Homology

• Gene Tree
  Gm5841
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  9
• RefSeq
  1

• Ensembl
  ENSMUSG00000103921 (Evidence)
• NCBI Gene
  545500

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103921	Ensembl Gene Model | MGI Sequence Detail	2177	C57BL/6J
transcript	ENSMUST00000195307	Ensembl | MGI Sequence Detail	2177	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;