Gm5911 Pseudogene Detail

Summary

• Symbol
  Gm5911
• Name
  predicted gene 5911

• Feature Type
  pseudogene
• IDs
  MGI:3645263
  NCBI Gene: 546080
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:85580714-85581231 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 41.23 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  77 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645263	pseudogene	Chr8:85580714-85581231 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving Gm5911
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  2

• NCBI Gene
  546080

Representative Sequences			Length	Strain/Species
genomic	546080	NCBI Gene Model | MGI Sequence Detail	518	C57BL/6J

References

• Summaries
  All 7

  Phenotypes 4
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm5911:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr82201	Chr8:85582302-85582304 (-)	-1,072 bp