Gm5627 Gene Detail

Summary

• Symbol
  Gm5627
• Name
  predicted gene 5627

• Feature Type
  lncRNA gene
• IDs
  MGI:3645308
  NCBI Gene: 434510
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr9:102616847-102633884 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 54.72 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  533 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645308	lncRNA gene	Chr9:102616847-102633884 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0035190	protein coding gene	Chr9:104317619-104336001 (+)
A/J	MGP_AJ_G0035170	protein coding gene	Chr9:100576331-100593243 (+)
AKR/J	MGP_AKRJ_G0035102	protein coding gene	Chr9:103054754-103073590 (+)
BALB/cJ	MGP_BALBcJ_G0035163	protein coding gene	Chr9:100282530-100299783 (+)
C3H/HeJ	MGP_C3HHeJ_G0034873	protein coding gene	Chr9:103454252-103471288 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0035683	protein coding gene	Chr9:107228258-107246063 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0032582	protein coding gene	Chr9:98163450-98178787 (+)
CAST/EiJ	MGP_CASTEiJ_G0034185	protein coding gene	Chr9:103269513-103295063 (+)
CBA/J	MGP_CBAJ_G0034842	protein coding gene	Chr9:110966736-110990253 (+)
DBA/2J	MGP_DBA2J_G0035003	protein coding gene	Chr9:100068028-100085876 (+)
FVB/NJ	MGP_FVBNJ_G0034951	protein coding gene	Chr9:98865802-98883099 (+)
LP/J	MGP_LPJ_G0035079	protein coding gene	Chr9:104524200-104543312 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0034990	protein coding gene	Chr9:112790560-112808321 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0035705	protein coding gene	Chr9:103304489-103321260 (+)
PWK/PhJ	MGP_PWKPhJ_G0033892	protein coding gene	Chr9:100310501-100328094 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0033727	protein coding gene	Chr9:103345820-103364306 (+)
WSB/EiJ	MGP_WSBEiJ_G0034305	protein coding gene	Chr9:103180095-103200832 (+)

Homology

• Gene Tree
  Gm5627
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  APF
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000093812 (Evidence)
• NCBI Gene
  434510

Representative Sequences			Length	Strain/Species
genomic	434510	NCBI Gene Model | MGI Sequence Detail	17038	C57BL/6J
transcript	NR_033301	RefSeq | MGI Sequence Detail	931	C57BL/6
polypeptide	Q3V3D0	UniProt | EBI | MGI Sequence Detail	110	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 9
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:157065 Helmholtz Zentrum Muenchen GmbH, Alleles produced for the EUCOMM and EUCOMMTools projects by the Helmholtz Zentrum Muenchen GmbH (Hmgu). MGI Direct Data Submission. 2010-2015;