Rps27a-ps3 Pseudogene Detail

Summary

• Symbol
  Rps27a-ps3
• Name
  ribosomal protein S27A, pseudogene 3
• Synonyms
  Gm8430

• Feature Type
  pseudogene
• IDs
  MGI:3645406
  NCBI Gene: 667035
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:122433863-122434333 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 57.56 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  79 from dbSNP Build 142
• Strain Annotations
  10

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645406	pseudogene	Chr6:122433825-122434380 (+)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0012874	pseudogene	Chr4:128698467-128698937 (-)
AKR/J	MGP_AKRJ_G0012846	pseudogene	Chr4:132306595-132307065 (-)
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0012711	pseudogene	Chr4:132557902-132558592 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0011356	pseudogene	Chr14:41241040-41241510 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012261	pseudogene	Chr7:124974467-124974937 (+)
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0012749	pseudogene	Chr4:129126589-129127059 (-)
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0012766	pseudogene	Chr4:147285390-147285860 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013209	pseudogene	Chr4:132712295-132714566 (-)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0012957	pseudogene	Chr7:39746310-39746780 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Rps27a-ps3
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  14
• RefSeq
  1

• Ensembl
  ENSMUSG00000055093 (Evidence)
• NCBI Gene
  667035

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000055093	Ensembl Gene Model | MGI Sequence Detail	471	C57BL/6J
transcript	ENSMUST00000119780	Ensembl | MGI Sequence Detail	471	Not Applicable

Other
Accession IDs

MGI:6416479

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Rps27a-ps3:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr58671	Chr6:122433822-122433824 (+)	-40 bp