Gm6501 Pseudogene Detail

Summary

• Symbol
  Gm6501
• Name
  predicted gene 6501

• Feature Type
  pseudogene
• IDs
  MGI:3645570
  NCBI Gene: 624395
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr19:11098874-11099789 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 7.76 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  62 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645570	pseudogene	Chr19:11098708-11099789 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013692	pseudogene	Chr6:127134174-127135023 (+)
A/J	MGP_AJ_G0013680	pseudogene	Chr6:122277495-122278344 (+)
AKR/J	MGP_AKRJ_G0013643	pseudogene	Chr6:125639661-125640510 (+)
BALB/cJ	MGP_BALBcJ_G0013660	pseudogene	Chr6:121913812-121914661 (+)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0014046	pseudogene	Chr6:130398881-130399730 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0013189	pseudogene	Chr6:125892694-125893543 (+)
CBA/J	MGP_CBAJ_G0013475	pseudogene	Chr6:135531438-135532287 (+)
DBA/2J	MGP_DBA2J_G0013555	pseudogene	Chr6:121210961-121211810 (+)
FVB/NJ	MGP_FVBNJ_G0013554	pseudogene	Chr6:120124888-120125737 (+)
LP/J	MGP_LPJ_G0013635	pseudogene	Chr6:127343224-127344073 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013568	pseudogene	Chr6:139439398-139440247 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014041	pseudogene	Chr6:125548944-125549793 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0013247	pseudogene	Chr6:125853978-125854827 (+)

Homology

• Gene Tree
  Gm6501
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000099998 (Evidence)
• NCBI Gene
  624395

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000099998	Ensembl Gene Model | MGI Sequence Detail	916	C57BL/6J
transcript	ENSMUST00000187178	Ensembl | MGI Sequence Detail	916	Not Applicable

References

• Summaries
  All 5

  Phenotypes 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm6501:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr155154	Chr19:11098715-11098734 (+)	-149 bp
Tssr155155	Chr19:11098747-11098775 (+)	-113 bp