Pwwp4d Gene Detail

Summary

• Symbol
  Pwwp4d
• Name
  PWWP domain containing 4D
• Synonyms
  Gm5936

• Feature Type
  protein coding gene
• IDs
  MGI:3645575
  NCBI Gene: 546325
• Alliance
  gene page

Location &
Maps

• Sequence Map
  ChrX:73880802-73886961 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 38.09 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  44 from dbSNP Build 142
• Strain Annotations
  11

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645575	protein coding gene	ChrX:73880362-73886975 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0035800	protein coding gene	ChrX:68829616-69049991 (+)
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0035526	protein coding gene	ChrX:71143913-71153025 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0036301	protein coding gene	ChrX:70944515-70951682 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0035449	protein coding gene	ChrX:72898059-72904535 (-)
DBA/2J	MGP_DBA2J_G0035655	protein coding gene	ChrX:70093101-70099090 (-)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0035692	protein coding gene	ChrX:69677937-69684247 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0035636	protein coding gene	ChrX:77197511-77207185 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0036369	protein coding gene	ChrX:70266005-70272749 (-)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0034347	protein coding gene	ChrX:57168048-57175372 (-)
WSB/EiJ	MGP_WSBEiJ_G0034909	protein coding gene	ChrX:68145582-68152512 (+)

Homology

• Human Ortholog
  PWWP4, PWWP domain containing 4

• Vertebrate Orthologs
  2

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  PWWP4, PWWP domain containing 4
  
• Links
  HGNC:55197

  NCBI Gene ID: 728317

  UniProt: A0A494C071

  
  
• Chr Location
  Xq28; chrX:153266147-153279145 (+)  GRCh38

---

• MGI Vertebrate Homology
  Pwwp4d stringent orthology
  1 human;1 mouse;1 zebrafish
  
• HCOP
  vertebrate homology predictions: PWWP4
• Gene Tree
  Pwwp4d
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  CvDC
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  4
• UniProt
  1
• CCDS
  CCDS53112.1

• Ensembl
  ENSMUSG00000079531 (Evidence)
• NCBI Gene
  546325

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000079531	Ensembl Gene Model | MGI Sequence Detail	6160	C57BL/6J
transcript	ENSMUST00000114116	Ensembl | MGI Sequence Detail	2857	Not Applicable
polypeptide	ENSMUSP00000109751	Ensembl | MGI Sequence Detail	728	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR035504 MUM1-like, PWWP domain
  IPR040263 PWWP domain-containing DNA repair factor 3A/3B/4
  IPR048795 PWWP domain-containing DNA repair factor 3A/3B/4, C-terminal
  IPR048765 PWWP domain-containing DNA repair factor 3A/3B/4, N-terminal

Other
Accession IDs

MGI:6460393

References

• Summaries
  All 7
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:155721 Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI), Consensus CDS project. Database Download. 2010;