Gm5316 Pseudogene Detail

Summary

• Symbol
  Gm5316
• Name
  predicted gene 5316

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3645576
  NCBI Gene: 102634348
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:122877095-122877364 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 57.99 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  100 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645576	pseudogene	Chr6:122876970-122877364 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0039742	pseudogene	Chr6:126025065-126028160 (-)
A/J	MGP_AJ_G0039742	pseudogene	Chr6:121249408-121252503 (-)
AKR/J	MGP_AKRJ_G0039667	pseudogene	Chr6:124607167-124610262 (-)
BALB/cJ	MGP_BALBcJ_G0039711	pseudogene	Chr6:120961279-120964374 (-)
C3H/HeJ	MGP_C3HHeJ_G0039373	pseudogene	Chr6:124571597-124574692 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0040273	pseudogene	Chr6:129354658-129357753 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036930	pseudogene	ChrX:147864222-147864475 (-)
CAST/EiJ	MGP_CASTEiJ_G0038491	pseudogene	Chr6:124836322-124839417 (-)
CBA/J	MGP_CBAJ_G0039345	pseudogene	Chr6:134389529-134392624 (-)
DBA/2J	MGP_DBA2J_G0039538	pseudogene	Chr6:120180444-120183539 (-)
FVB/NJ	MGP_FVBNJ_G0039496	pseudogene	Chr6:119112259-119115354 (-)
LP/J	MGP_LPJ_G0039577	pseudogene	Chr6:126217177-126220272 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039498	pseudogene	Chr6:138350086-138353181 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040374	pseudogene	Chr6:124493590-124496685 (-)
PWK/PhJ	MGP_PWKPhJ_G0038166	pseudogene	Chr6:119020879-119023974 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0037914	pseudogene	Chr6:122640604-122643714 (-)
WSB/EiJ	MGP_WSBEiJ_G0038725	pseudogene	Chr6:124809442-124812538 (-)

Homology

• Gene Tree
  Gm5316
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000049249 (Evidence)
• NCBI Gene
  102634348

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000049249	Ensembl Gene Model | MGI Sequence Detail	270	C57BL/6J
transcript	ENSMUST00000050391	Ensembl | MGI Sequence Detail	270	Not Applicable
polypeptide	XP_036008361	RefSeq | MGI Sequence Detail	89	C57BL/6J

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;