Gm5519 Pseudogene Detail

Summary

• Symbol
  Gm5519
• Name
  predicted pseudogene 5519

• Feature Type
  pseudogene
• IDs
  MGI:3645618
  NCBI Gene: 433241
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr19:33800308-33802468 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 29.25 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  127 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645618	pseudogene	Chr19:33800297-33804310 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0021560	protein coding gene	Chr14:68279256-68283032 (-)
A/J	MGP_AJ_G0025026	protein coding gene	Chr19:30974610-30976801 (+)
AKR/J	MGP_AKRJ_G0021495	protein coding gene	Chr14:68740475-68744241 (-)
BALB/cJ	MGP_BALBcJ_G0021525	protein coding gene	Chr14:66550809-66553015 (-)
C3H/HeJ	MGP_C3HHeJ_G0021302	protein coding gene	Chr14:68468899-68473255 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0026164	protein coding gene	Chr2:59385666-59386098 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0021270	protein coding gene	Chr14:73521132-73524908 (-)
DBA/2J	MGP_DBA2J_G0021393	protein coding gene	Chr14:66160323-66164659 (-)
FVB/NJ	MGP_FVBNJ_G0021371	protein coding gene	Chr14:65541783-65546429 (-)
LP/J	MGP_LPJ_G0021463	protein coding gene	Chr14:69448931-69450997 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0024881	protein coding gene	Chr19:34852753-34857675 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0021987	protein coding gene	Chr14:68018005-68024591 (-)
PWK/PhJ	MGP_PWKPhJ_G0024000	protein coding gene	Chr19:30507409-30508158 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0020398	protein coding gene	Chr14:63983314-63987080 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm5519
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix
• Find Mice (IMSR)
  11 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000037603 (Evidence)
• NCBI Gene
  433241

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000037603	Ensembl Gene Model | MGI Sequence Detail	2161	C57BL/6J
transcript	ENSMUST00000042061	Ensembl | MGI Sequence Detail	507	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;