Gm5587 Pseudogene Detail

Summary

• Symbol
  Gm5587
• Name
  predicted gene 5587

• Feature Type
  pseudogene
• IDs
  MGI:3645641
  NCBI Gene: 434148
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr7:25118578-25119251 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 13.81 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  127 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645641	pseudogene	Chr7:25117805-25119261 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0013842	pseudogene	Chr7:23891373-23892046 (-)
A/J	MGP_AJ_G0013840	pseudogene	Chr7:23267215-23267888 (-)
AKR/J	MGP_AKRJ_G0013788	pseudogene	Chr7:23817712-23821974 (-)
BALB/cJ	MGP_BALBcJ_G0013821	pseudogene	Chr7:23481741-23482414 (-)
C3H/HeJ	MGP_C3HHeJ_G0013644	pseudogene	Chr7:24250545-24251218 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0014216	pseudogene	Chr7:24694959-24695632 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010272	pseudogene	Chr18:58517959-58522092 (-)
CAST/EiJ	MGP_CASTEiJ_G0013322	pseudogene	Chr7:17738381-17741033 (-)
CBA/J	MGP_CBAJ_G0013625	pseudogene	Chr7:25603803-25604476 (-)
DBA/2J	MGP_DBA2J_G0013702	pseudogene	Chr7:23174286-23174959 (-)
FVB/NJ	MGP_FVBNJ_G0013699	pseudogene	Chr7:23171792-23172465 (-)
LP/J	MGP_LPJ_G0013782	pseudogene	Chr7:24188538-24189211 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013717	pseudogene	Chr7:25303013-25303687 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014196	pseudogene	Chr7:23521913-23522586 (-)
PWK/PhJ	MGP_PWKPhJ_G0013133	pseudogene	Chr7:18124281-18125118 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0010803	pseudogene	Chr18:61031090-61035887 (-)
WSB/EiJ	MGP_WSBEiJ_G0013381	pseudogene	Chr7:23708962-23711680 (-)

Homology

• Gene Tree
  Gm5587
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000108518 (Evidence)
• NCBI Gene
  434148

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108518	Ensembl Gene Model | MGI Sequence Detail	674	C57BL/6J
transcript	ENSMUST00000206270	Ensembl | MGI Sequence Detail	674	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 2

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:157972 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2). Database Download. 2010;