Gm6590 Pseudogene Detail

Summary

• Symbol
  Gm6590
• Name
  predicted gene 6590

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3645685
  NCBI Gene: 625473
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:130430032-130453991 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 63.44 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  267 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645685	pseudogene	Chr6:130430032-130454774 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0040479	pseudogene	Chr6:134228968-134246816 (-)
A/J	MGP_AJ_G0040463	pseudogene	Chr6:129055801-129081462 (-)
AKR/J	MGP_AKRJ_G0040390	pseudogene	Chr6:132634442-132663769 (-)
BALB/cJ	MGP_BALBcJ_G0040469	pseudogene	Chr6:128744249-128768881 (-)
C3H/HeJ	MGP_C3HHeJ_G0040089	pseudogene	Chr6:132829218-132853464 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0041086	pseudogene	Chr6:137871230-137898090 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0039152	pseudogene	Chr6:132814727-132832914 (-)
CBA/J	MGP_CBAJ_G0040062	pseudogene	Chr6:143148111-143173433 (-)
DBA/2J	MGP_DBA2J_G0040262	pseudogene	Chr6:127950196-127974255 (-)
FVB/NJ	MGP_FVBNJ_G0040210	pseudogene	Chr6:126921826-126931927 (-)
LP/J	MGP_LPJ_G0040304	pseudogene	Chr6:134483392-134508803 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0040203	pseudogene	Chr6:147069164-147091807 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0041163	pseudogene	Chr6:132736510-132765550 (-)
PWK/PhJ	MGP_PWKPhJ_G0038833	pseudogene	Chr6:126123681-126146526 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0038544	pseudogene	Chr6:130922953-130953009 (-)
WSB/EiJ	MGP_WSBEiJ_G0039395	pseudogene	Chr6:133199046-133221279 (-)

Homology

• Gene Tree
  Gm6590
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  2

• Ensembl
  ENSMUSG00000107492 (Evidence)
• NCBI Gene
  625473

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107492	Ensembl Gene Model | MGI Sequence Detail	23960	C57BL/6J
transcript	ENSMUST00000203343	Ensembl | MGI Sequence Detail	687	Not Applicable
polypeptide	XP_036008319	RefSeq | MGI Sequence Detail	230	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 2

References

• Summaries
  All 8
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:157972 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2). Database Download. 2010;