Gm8659 Pseudogene Detail

Summary

• Symbol
  Gm8659
• Name
  predicted gene 8659

• Feature Type
  pseudogene
• IDs
  MGI:3645697
  NCBI Gene: 667483
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:156933092-156934175 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 73.01 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  85 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645697	pseudogene	ChrX:156932786-156934357 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014965	pseudogene	ChrX:156054669-156055752 (+)
A/J	MGP_AJ_G0014956	pseudogene	ChrX:155354939-155356022 (+)
AKR/J	MGP_AKRJ_G0014897	pseudogene	ChrX:160249629-160250712 (+)
BALB/cJ	MGP_BALBcJ_G0014910	pseudogene	ChrX:153409512-153410598 (+)
C3H/HeJ	MGP_C3HHeJ_G0014748	pseudogene	ChrX:156434605-156435688 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015396	pseudogene	ChrX:160671554-160672637 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013020	pseudogene	ChrX:146677970-146679055 (+)
CAST/EiJ	MGP_CASTEiJ_G0014355	pseudogene	ChrX:135533172-135534258 (+)
CBA/J	MGP_CBAJ_G0014734	pseudogene	ChrX:165243993-165245076 (+)
DBA/2J	MGP_DBA2J_G0014817	pseudogene	ChrX:154320523-154321606 (+)
FVB/NJ	MGP_FVBNJ_G0014800	pseudogene	ChrX:153436308-153437391 (+)
LP/J	MGP_LPJ_G0014918	pseudogene	ChrX:157195886-157196969 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014844	pseudogene	ChrX:173906902-173907988 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015380	pseudogene	ChrX:155603678-155604764 (+)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0013937	pseudogene	ChrX:135934165-135935251 (+)
WSB/EiJ	MGP_WSBEiJ_G0014434	pseudogene	ChrX:153595462-153596545 (+)

Homology

• Gene Tree
  Gm8659
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  2

• Ensembl
  ENSMUSG00000082076 (Evidence)
• NCBI Gene
  667483

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082076	Ensembl Gene Model | MGI Sequence Detail	1084	C57BL/6J
transcript	ENSMUST00000120024	Ensembl | MGI Sequence Detail	1084	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm8659:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr162458	ChrX:156932821-156932824 (+)	-269 bp